View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8743_high_6 (Length: 259)
Name: NF8743_high_6
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8743_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 4771169 - 4771405
Alignment:
| Q |
19 |
acatcagaagacaaatttctactaagttctccc---atgaaatgttcattagtgtaagctaaacctctgttatctccaccgtaaacattggagttatcac |
115 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4771169 |
acatcagaagacaaattttcgctaaattctccgtcaatgaaatgttcattagtgtaagctaaacctctgttatctccaccataaacattggagttatcac |
4771268 |
T |
|
| Q |
116 |
tatgttttccattactagtaacccataaaaattacttccttataattggatcttgaatcagattcttaactg---ataatataacttttcttcttattta |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4771269 |
tatgttttccattactagtaacccgtaaaaattacttgcttaaaattggatcttgaatcagattcttaactgataataatataacttttcttcttattta |
4771368 |
T |
|
| Q |
213 |
ttcttggatcccattcactcttttgcaaacaccaaac |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4771369 |
ttcttggatcccattcactcttttgcaaacactaaac |
4771405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 2140705 - 2140652
Alignment:
| Q |
85 |
ttatctccaccgtaaacattggagttatcactatgttttccattactagtaacc |
138 |
Q |
| |
|
||||||||| | ||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
2140705 |
ttatctccatcataaacatgggggttaccactatgttttccattactagtaacc |
2140652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University