View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8743_high_9 (Length: 227)

Name: NF8743_high_9
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8743_high_9
NF8743_high_9
[»] chr4 (22 HSPs)
chr4 (1-205)||(22340575-22340779)
chr4 (1-205)||(29123460-29123665)
chr4 (1-209)||(4303224-4303432)
chr4 (1-201)||(18116404-18116604)
chr4 (1-148)||(17826803-17826950)
chr4 (53-209)||(15705634-15705790)
chr4 (1-201)||(23158172-23158372)
chr4 (1-201)||(36279225-36279425)
chr4 (1-209)||(8110910-8111118)
chr4 (1-201)||(51872685-51872885)
chr4 (8-205)||(12915787-12915984)
chr4 (1-205)||(3621498-3621702)
chr4 (5-201)||(15649093-15649289)
chr4 (143-209)||(17838698-17838764)
chr4 (1-78)||(50693776-50693853)
chr4 (1-78)||(36951324-36951401)
chr4 (2-78)||(17469147-17469223)
chr4 (142-201)||(6614197-6614256)
chr4 (13-85)||(24059759-24059831)
chr4 (136-207)||(29192472-29192543)
chr4 (134-189)||(36951213-36951268)
chr4 (134-189)||(50693909-50693964)
[»] chr1 (9 HSPs)
chr1 (1-209)||(49369759-49369967)
chr1 (1-201)||(41342830-41343030)
chr1 (1-177)||(27029976-27030152)
chr1 (1-201)||(10003931-10004131)
chr1 (138-209)||(5557259-5557330)
chr1 (13-102)||(24545091-24545180)
chr1 (19-78)||(37668976-37669035)
chr1 (1-102)||(28520859-28520960)
chr1 (14-81)||(26996083-26996150)
[»] chr3 (17 HSPs)
chr3 (1-209)||(8595249-8595457)
chr3 (1-205)||(23603259-23603462)
chr3 (1-209)||(42462712-42462920)
chr3 (1-201)||(23571643-23571843)
chr3 (1-209)||(48547546-48547754)
chr3 (1-201)||(3514684-3514884)
chr3 (1-201)||(17153829-17154029)
chr3 (1-201)||(9819060-9819260)
chr3 (26-201)||(53152132-53152307)
chr3 (1-78)||(16664099-16664176)
chr3 (5-78)||(39632858-39632931)
chr3 (5-145)||(42459329-42459469)
chr3 (1-78)||(52196409-52196486)
chr3 (14-78)||(10754186-10754250)
chr3 (136-207)||(39632989-39633060)
chr3 (134-189)||(16663988-16664043)
chr3 (136-192)||(10754072-10754128)
[»] chr2 (9 HSPs)
chr2 (2-209)||(38938464-38938671)
chr2 (1-198)||(30275892-30276089)
chr2 (1-201)||(32349874-32350074)
chr2 (1-201)||(21963408-21963608)
chr2 (1-201)||(23384843-23385043)
chr2 (1-155)||(21964639-21964793)
chr2 (31-201)||(27914653-27914823)
chr2 (1-78)||(1258584-1258661)
chr2 (1-106)||(22300858-22300963)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-209)||(58418-58626)
[»] chr5 (12 HSPs)
chr5 (1-207)||(11266019-11266225)
chr5 (1-209)||(27891690-27891898)
chr5 (1-201)||(5824991-5825191)
chr5 (1-201)||(6678600-6678798)
chr5 (1-209)||(29150297-29150504)
chr5 (85-201)||(10462243-10462359)
chr5 (1-78)||(29322916-29322993)
chr5 (1-81)||(31962694-31962774)
chr5 (1-78)||(8896369-8896446)
chr5 (1-78)||(38931892-38931969)
chr5 (134-207)||(8895378-8895451)
chr5 (132-189)||(31962825-31962882)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-209)||(74290-74498)
[»] chr7 (18 HSPs)
chr7 (1-209)||(40891786-40891994)
chr7 (2-201)||(586784-586983)
chr7 (1-201)||(12121586-12121786)
chr7 (1-201)||(37075612-37075812)
chr7 (1-201)||(24819697-24819897)
chr7 (1-201)||(36575404-36575604)
chr7 (2-201)||(34981847-34982046)
chr7 (1-201)||(9403154-9403347)
chr7 (1-209)||(20705514-20705722)
chr7 (1-209)||(20873558-20873766)
chr7 (2-87)||(27987590-27987675)
chr7 (2-81)||(27869020-27869099)
chr7 (1-78)||(22865770-22865847)
chr7 (1-78)||(47548969-47549046)
chr7 (1-78)||(47553412-47553489)
chr7 (2-102)||(18815416-18815516)
chr7 (8-81)||(8457213-8457286)
chr7 (125-189)||(27868912-27868976)
[»] chr8 (6 HSPs)
chr8 (1-201)||(26077748-26077948)
chr8 (1-209)||(29532349-29532557)
chr8 (1-169)||(31423263-31423431)
chr8 (1-193)||(26390264-26390456)
chr8 (1-78)||(10801702-10801779)
chr8 (137-201)||(2959748-2959812)
[»] chr6 (8 HSPs)
chr6 (1-201)||(18295418-18295618)
chr6 (1-193)||(667283-667465)
chr6 (1-209)||(28604909-28605117)
chr6 (1-205)||(7218372-7218576)
chr6 (1-201)||(2894237-2894437)
chr6 (2-106)||(17228031-17228135)
chr6 (134-189)||(5391672-5391727)
chr6 (1-78)||(5391539-5391616)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-205)||(224748-224952)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22340779 - 22340575
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||| |||||||||||    
T  22340779 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagacttgctacaaaggacaaccttcgcaagaggaat 22340680  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22340679 gtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggc 22340580  T
Q  201 tcttg 205  Q
    |||||    
T  22340579 tcttg 22340575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 29123460 - 29123665
Alignment:
Q  1 atttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaa 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  29123460 atttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaa 29123559  T
Q  100 tgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatgg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||    
T  29123560 tgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgttttttcaatgtgatttttatggtcgattatgg 29123659  T
Q  200 ctcttg 205  Q
    ||||||    
T  29123660 ctcttg 29123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4303224 - 4303432
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  4303224 atttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatcttcgcaagaggaat 4303323  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
     ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||| |    
T  4303324 atccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatgac 4303423  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  4303424 tcttgatat 4303432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18116404 - 18116604
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  18116404 atttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaaggacaatcttcgcaagaggaat 18116503  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||    
T  18116504 gtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggc 18116603  T
Q  201 t 201  Q
    |    
T  18116604 t 18116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 17826803 - 17826950
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  17826803 atttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggagaatcttcgcaagaggaat 17826902  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggag 148  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  17826903 gtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 15705634 - 15705790
Alignment:
Q  53 ctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagg 152  Q
    |||| |||| || ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  153 aaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttgatat 209  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatat 15705790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 23158172 - 23158372
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  23158172 atttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaat 23158271  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  23158272 gttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatatgattattatggtcgattatggc 23158371  T
Q  201 t 201  Q
    |    
T  23158372 t 23158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 36279225 - 36279425
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||| ||||||||||||||||||| |||||| | |||||||||    
T  36279225 atttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaaggataatcttcgtaagaggaat 36279324  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| |||||||  ||  ||||||||  || || ||||||||||||||| ||||  ||||||||||||| ||||||| ||||||||||||||||||||    
T  36279325 gttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatgtgcttattatggtcgattatggc 36279424  T
Q  201 t 201  Q
    |    
T  36279425 t 36279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8111118 - 8110910
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||||||| |||||||||| ||||||||||| ||  ||||||||||     
T  8111118 atttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaac 8111019  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    ||| || ||| | |  ||   ||||| |||||||||||||||||||||||||||||  | ||||| ||||||||||||||| ||||||||||||||||||    
T  8111018 gtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaatgtgatcattatggtcgattatggc 8110919  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  8110918 tcttgatat 8110910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 51872885 - 51872685
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  51872885 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaat 51872786  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| |||||||  ||  ||| | ||  || || | ||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||    
T  51872785 gttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggc 51872686  T
Q  201 t 201  Q
    |    
T  51872685 t 51872685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 12915984 - 12915787
Alignment:
Q  8 tggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgtccttc 107  Q
    |||||||| |||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||  |  |||| ||||||||||||     
T  12915984 tggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaatagaattgctacaaagaacaacttgcgcaaaaggaatgtccttg 12915885  T
Q  108 aggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttg 205  Q
     |||||   ||  ||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||  ||||||| || ||||||||||||    
T  12915884 cggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttattttttcaatgtgaccattatgggcggttatggctcttg 12915787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 3621702 - 3621498
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||| |||| || ||||| ||||| |||||||| ||| |||| |||||| |||||||||| ||||||||||| ||  | ||||||||     
T  3621702 atttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaaggacaacctgcgtaagaggaac 3621603  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| ||| | |  ||   ||||| ||| |||||||||||||||||||||||||| | ||||| ||||| ||||||||| |||||||||| |||||||    
T  3621602 gttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccatttttttttccaatgtgatcattatggtcggttatggc 3621503  T
Q  201 tcttg 205  Q
    |||||    
T  3621502 tcttg 3621498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 15649093 - 15649289
Alignment:
Q  5 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgtcc 104  Q
    |||||||||||||| || || ||||| ||||| |||||||||||| | ||||||||| || | |||||||||||||| |||||| ||||| |||||||||    
T  15649093 ttatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaaggataatcttcgcaagcggaatgtcc 15649192  T
Q  105 ttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    |  |||||||  |   || |||||   | || ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||    
T  15649193 tcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatgtgattattatggtcggttatggct 15649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 17838698 - 17838764
Alignment:
Q  143 aaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttgatat 209  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatat 17838764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 50693776 - 50693853
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  50693776 atttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36951401 - 36951324
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||||||| || || |||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  36951401 atttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 17469147 - 17469223
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    ||||||||| | ||||||||||| || || ||||||||||||||||||  |||||||||| ||||||||||||||||    
T  17469147 tttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 6614197 - 6614256
Alignment:
Q  142 taaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 6614256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 24059831 - 24059759
Alignment:
Q  13 taaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaat 85  Q
    |||| ||||| | ||||||||||| |||||||||||  |||||||| ||  ||||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaat 24059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 29192472 - 29192543
Alignment:
Q  136 gtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 207  Q
    |||||||||||| ||||||||  | ||| |||||||||| |||||| ||||||||||| | |||||||||||    
T  29192472 gtgtggtaaggaagaggaaagggaccatctgttttttcattgtgatcattatggtcgactttggctcttgat 29192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 36951268 - 36951213
Alignment:
Q  134 ttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatgg 189  Q
    |||||||||||||| ||||||||  |||||||||||||| | |||||| |||||||    
T  36951268 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 36951213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 50693909 - 50693964
Alignment:
Q  134 ttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatgg 189  Q
    |||||||||||||| ||||||||  |||||||||||||| | |||||| |||||||    
T  50693909 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 50693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 49369967 - 49369759
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  49369967 atttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaat 49369868  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  49369867 gtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggc 49369768  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  49369767 tcttgatat 49369759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41342830 - 41343030
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  41342830 atttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaaggacaatcttcgcaagaggaat 41342929  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||    
T  41342930 gtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggc 41343029  T
Q  201 t 201  Q
    |    
T  41343030 t 41343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27030152 - 27029976
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| | || ||| || |||||||||||| |||||| |||||| | |||||||||    
T  27030152 atttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaaggataatcttcgtaagaggaat 27030053  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 177  Q
    |||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||| ||||||||||||| |||||    
T  27030052 gtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10004131 - 10003931
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| |||||||| || ||||||| |||| | ||||||||| ||||||||||||||||||| |||||| | |||| ||||    
T  10004131 atttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaaggataatcttcgtaagaagaat 10004032  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    ||| || |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  |||||||||||||  |||| || | ||||||||| |||||||    
T  10004031 gtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgtttttcgaatgcgacttttatggtcggttatggc 10003932  T
Q  201 t 201  Q
    |    
T  10003931 t 10003931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 5557330 - 5557259
Alignment:
Q  138 gtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttgatat 209  Q
    |||||||||||||||||||  | |||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttgatat 5557259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  13 taaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgt 102  Q
    ||||| |||||| ||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||||| |||||| | ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  19 ggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||| || || |||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28520859 - 28520960
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||| ||||||||||||||| | ||||| || || || ||||| ||| ||||||| ||| |||||||||||||| |||| ||| | || | |||||||    
T  28520859 atttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttgctacagaggataatttgtgtatgaggaat 28520958  T
Q  101 gt 102  Q
    ||    
T  28520959 gt 28520960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  14 aaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaagga 81  Q
    |||||| |||| ||||| ||||| |||||||| ||| ||||||||||| ||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8595457 - 8595249
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  8595457 atttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgtaagaggaat 8595358  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
     ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  | |||||||||||||||||||||||||||||||| |||||||    
T  8595357 atccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgtttatggc 8595258  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  8595257 tcttgatat 8595249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23603462 - 23603259
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||| ||| |||||||||||    
T  23603462 atttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctactaaggacaaccttcgcaagaggaat 23603363  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||    
T  23603362 gtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatgtgatttttatggtcgactatggc 23603264  T
Q  201 tcttg 205  Q
    |||||    
T  23603263 tcttg 23603259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 42462920 - 42462712
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||    
T  42462920 atttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagacttgctacaaaggacaatcttcgcaagaggaat 42462821  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    ||||||||||||||| || | ||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  42462820 gtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggc 42462721  T
Q  201 tcttgatat 209  Q
    | |||||||    
T  42462720 ttttgatat 42462712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 23571643 - 23571843
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||| |||||| ||||    
T  23571643 atttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaaggacaatcttcgcaagacgaat 23571742  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||| |||||||    
T  23571743 gtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcggttatggc 23571842  T
Q  201 t 201  Q
    |    
T  23571843 t 23571843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 48547754 - 48547546
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||| ||||| ||||| ||||| |||||||| ||| ||||||||||| |||||||||| ||||||||||| ||  ||||||||||     
T  48547754 atttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaac 48547655  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| ||| | |  ||  |||||| |||||||||||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||    
T  48547654 gtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggc 48547555  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  48547554 tcttgatat 48547546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 3514884 - 3514684
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |  |||||||| ||||||||||||||||||| |||||| |||||||||||    
T  3514884 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaat 3514785  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| ||||||   ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||| |||||||    
T  3514784 gttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgcttatggc 3514685  T
Q  201 t 201  Q
    |    
T  3514684 t 3514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17153829 - 17154029
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||| | |||||| || ||||||||||||||||||| |||||| |||||||||||    
T  17153829 atttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaaaggataatcttcgcaagaggaat 17153928  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  ||||||||||||| |||||||||||||||||||| |||||||    
T  17153929 gtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggc 17154028  T
Q  201 t 201  Q
    |    
T  17154029 t 17154029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 9819260 - 9819060
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||| | || |||||| ||||||||||||||||||| |||||| | |||||||||    
T  9819260 atttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaat 9819161  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  ||||||||  || || ||||||||||||||||| |   ||||||||||||| ||||| || | ||||||||| |||||||    
T  9819160 gtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatgcgacttttatggtcgtttatggc 9819061  T
Q  201 t 201  Q
    |    
T  9819060 t 9819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 53152132 - 53152307
Alignment:
Q  26 ttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgtccttcaggctacagatacttctt 125  Q
    ||||||||||| |||||||||||| | ||||||| | || |||||||||||||||| |||||| ||||||||||||||||  |||||||  ||  || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  126 gtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    |||  || || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggct 53152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16664176 - 16664099
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  16664176 atttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 16664099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 39632858 - 39632931
Alignment:
Q  5 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||| | ||||||||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 39632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 42459329 - 42459469
Alignment:
Q  5 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgtcc 104  Q
    ||||||||||| | |||||| ||||| |||||||||||||||||  |||| |||||| ||||| ||||||||||||||||  |   ||| ||||||||||    
T  42459329 ttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaattgctacaaaggacaacttgcacaaaaggaatgtcc 42459428  T
Q  105 ttcaggctacagatact-tcttgtgcggccttgtgtggtaag 145  Q
    || |||||| | | | | ||||||||| ||||||||||||||    
T  42459429 ttgaggcta-acaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 52196486 - 52196409
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||||||| || || |||||||||||||||||| | ||||||||| ||||||||||||||||    
T  52196486 atttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  14 aaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    ||||||||||| || || |||||||| ||||||||| |||||||| || ||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 39632989 - 39633060
Alignment:
Q  136 gtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 207  Q
    |||||||||||| ||||||||  ||||| |||||||||| |||||  ||||||||||| | |||||||||||    
T  39632989 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgaccattatggtcgactttggctcttgat 39633060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 16664043 - 16663988
Alignment:
Q  134 ttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatgg 189  Q
    |||||||||||||| ||||||||  |||||||||||||| | |||||| |||||||    
T  16664043 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 16663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 10754128 - 10754072
Alignment:
Q  136 gtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcg 192  Q
    |||||||||||| ||||||||  ||||| |||||||||  |||||| ||||||||||    
T  10754128 gtgtggtaaggaagaggaaagggatcatctgttttttctttgtgatcattatggtcg 10754072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 38938671 - 38938464
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatg 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  38938671 tttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaatcttcgcaagaggaatg 38938572  T
Q  102 tccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    || ||||||||||| || |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||| ||    
T  38938571 tctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattttttcaatgtgattattatggtcgattatgact 38938472  T
Q  202 cttgatat 209  Q
    ||||||||    
T  38938471 cttgatat 38938464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 30276089 - 30275892
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||||||| |||||| |||||||||||    
T  30276089 atttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaaggataatcttcgcaagaggaat 30275990  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatg 198  Q
    || ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  30275989 gttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatgtgattattatggtcgattatg 30275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32350074 - 32349874
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||| | |||| |||||||||||    
T  32350074 atttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaaaggatattcttcgcaagaggaat 32349975  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||    
T  32349974 gttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggc 32349875  T
Q  201 t 201  Q
    |    
T  32349874 t 32349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 21963608 - 21963408
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||| | ||||||||| || |||||||||||||||| |||||| |||||||||||    
T  21963608 atttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaat 21963509  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || |||||||||||||||||||   ||||||||||||||| |||||||||||||||| | |||||||    
T  21963508 gtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgattattatggtaggttatggc 21963409  T
Q  201 t 201  Q
    |    
T  21963408 t 21963408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23385043 - 23384843
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||| |||||| |||||||||||| |||||| |||||||||||    
T  23385043 atttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaaaggataatcttcgcaagaggaat 23384944  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  |||||||||| || |||||||||||||||||| | |||||||    
T  23384943 gtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatgtgattattatggttggttatggc 23384844  T
Q  201 t 201  Q
    |    
T  23384843 t 23384843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21964793 - 21964639
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||| | ||||||||| || |||||||||||||||| |||||| |||||||||||    
T  21964793 atttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaat 21964694  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaa 155  Q
    |||||  |||||||  ||  || |||||  || || |||||||||||||||||||    
T  21964693 gtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 27914653 - 27914823
Alignment:
Q  31 agttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatgtccttcaggctacagatacttcttgtgcg 130  Q
    |||||| |||||||||||  |  |||||||| ||||||||||||||||||| |||||| ||||||||||||||||  |||||||  ||  || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  131 gccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    ||  | ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 27914823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1258661 - 1258584
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||||||| || || |||||||| ||||||| | ||||||||||| ||||||||||||||||    
T  1258661 atttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22300963 - 22300858
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||| | |||| |||||| || || |||||||| |||||  |  ||||||||||| |||||| |||||||||||| ||| |  |||| || |||    
T  22300963 atttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaagaaat 22300864  T
Q  101 gtcctt 106  Q
    ||||||    
T  22300863 gtcctt 22300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 58418 - 58626
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  58418 atttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 58517  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||  | | ||||||||||||||||||  |||||||||| |||||||    
T  58518 gtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttttttcaatgtgacaattatggtcggttatggc 58617  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  58618 tcttgatat 58626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 11266225 - 11266019
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  11266225 atttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 11266126  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||||||||||||| ||||||||||| |||||||    
T  11266125 gtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgactattatggtcggttatggc 11266026  T
Q  201 tcttgat 207  Q
    |||||||    
T  11266025 tcttgat 11266019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27891898 - 27891690
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||| |||  |||||||||| |||||||||| ||||||||||| ||  ||||||||||     
T  27891898 atttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaac 27891799  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||||||| | |  ||   ||||| |||||||||||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||    
T  27891798 gtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggc 27891699  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  27891698 tcttgatat 27891690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 5824991 - 5825191
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||| | ||||||||| || |||||||||||||||| |||||| |||||||||||    
T  5824991 atttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaat 5825090  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||||| |||||||||||||||| | |||||||    
T  5825091 gtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgattattatggtaggttatggc 5825190  T
Q  201 t 201  Q
    |    
T  5825191 t 5825191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6678600 - 6678798
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||| |||  || |||||||||||| | ||||||||| || |||||||||||||||| |||||| |||||||||||    
T  6678600 atttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaat 6678697  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || | ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  6678698 gtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatgtgattattatggtcggttatggc 6678797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 29150504 - 29150297
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| || ||| ||||||||||||||||||||||  |  |||| ||||||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||| | ||||||   ||   |||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||  ||||||| || |||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggc 29150306  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  29150305 tcttgatat 29150297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 10462243 - 10462359
Alignment:
Q  85 tctttgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattat 184  Q
    |||| ||||||||||||||||  |||||||  ||  || |||||  || || ||| ||||||||||||||||  ||||||||||||| ||||||||||||    
T  10462243 tcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgattat 10462342  T
Q  185 tatggtcgattatggct 201  Q
    |||||||| ||||||||    
T  10462343 tatggtcggttatggct 10462359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29322993 - 29322916
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||| ||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  29322993 atttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31962694 - 31962774
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaagga 81  Q
    |||||||||||| |||| |||||| ||||| |||||||| |||||||||  ||||| |||| |||||||||||||||||||    
T  31962694 atttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaagga 31962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8896446 - 8896369
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||||||  || || ||||||||  |||||||| ||||||||||| ||||||||||||||||    
T  8896446 atttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38931969 - 38931892
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | |||||||||||  | || |||||||| |||||||||  |||||||||| ||||||||||||||||    
T  38931969 atttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 8895451 - 8895378
Alignment:
Q  134 ttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 207  Q
    |||||||||||||| ||||||||  ||||| |||||||| | |||||| ||||||| ||| | ||||| |||||    
T  8895451 ttgtgtggtaaggaagaggaaagggatcatatgttttttaattgtgatcattatgggcgactttggcttttgat 8895378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 31962825 - 31962882
Alignment:
Q  132 ccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatgg 189  Q
    |||||||||||||||| ||||| ||  | |||||||||||||| |||||| |||||||    
T  31962825 ccttgtgtggtaaggaagaggatagggaccatttgttttttcattgtgatcattatgg 31962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 74498 - 74290
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  74498 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 74399  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| |||||||||||||||||||  |||||||    
T  74398 gtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggc 74299  T
Q  201 tcttgatat 209  Q
    | |||||||    
T  74298 ttttgatat 74290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 40891786 - 40891994
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  40891786 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 40891885  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| |||||||||||||||||||  |||||||    
T  40891886 gtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggc 40891985  T
Q  201 tcttgatat 209  Q
    | |||||||    
T  40891986 ttttgatat 40891994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 586983 - 586784
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatg 101  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| || |||||||||||||||||||||||||| | || |||||||    
T  586983 tttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaaggacaatcttcgtaaaaggaatg 586884  T
Q  102 tccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    ||||| |||||||  ||  |||  ||| |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  586883 tccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggct 586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 12121786 - 12121586
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  12121786 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaat 12121687  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||  ||| |||  ||  ||||||||  || || |||||||||||||||||||   ||||||||||||| ||||| ||||||||||||||||||||||    
T  12121686 gttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatgcgattattatggtcgattatggc 12121587  T
Q  201 t 201  Q
    |    
T  12121586 t 12121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 37075612 - 37075812
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| | || |||||||||||||||| |||||| |||||||||||    
T  37075612 atttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaat 37075711  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  37075712 gtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcggttatggc 37075811  T
Q  201 t 201  Q
    |    
T  37075812 t 37075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 24819897 - 24819697
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| | || |||||| ||||||||||||||||||| |||||| | ||||||||     
T  24819897 atttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaac 24819798  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  |   ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| || ||||||||||| |||||||    
T  24819797 gtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgactattatggtcgtttatggc 24819698  T
Q  201 t 201  Q
    |    
T  24819697 t 24819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 36575404 - 36575604
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| | || |||||| ||||||||||||||||||| |||||| | |||||||||    
T  36575404 atttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaat 36575503  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  ||||||||||||| ||||| || | ||||||||| |||||||    
T  36575504 gtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcgtttatggc 36575603  T
Q  201 t 201  Q
    |    
T  36575604 t 36575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 34982046 - 34981847
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatg 101  Q
    |||||||||||||||||||| || ||||| ||||| |||||||||||| | ||||||||| || | |||||||||||||| |||||| ||||||||||||    
T  34982046 tttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaaggataatcttcgcaagaggaatg 34981947  T
Q  102 tccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    ||||  |||||||  |   ||  ||||  || || ||||||||||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||||    
T  34981946 tcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatgtgattattatggtcggttatggct 34981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 9403154 - 9403347
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||         ||| || |||||||||||||||| |||||| |||||||||||    
T  9403154 atttttatggcttaaagcggttcctttaaaagttaatatttttgtttggac-------ctgaatcgacttgctacaaaggataatcttcgcaagaggaat 9403246  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||    
T  9403247 gtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggc 9403346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 20705514 - 20705722
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||| | || || || || ||||| |||||||| ||| |||| |||||| |||||||||| |||||||| |||||  ||||||| ||     
T  20705514 atttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaaggataatctgcgcaagagaaac 20705613  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||| || |||||||    
T  20705614 gttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggc 20705713  T
Q  201 tcttgatat 209  Q
    | |||||||    
T  20705714 ttttgatat 20705722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 20873558 - 20873766
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||| | || || || || ||||| |||||||| ||| |||| |||||| |||||||||| |||||||| |||||  ||||||| ||     
T  20873558 atttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaaggataatctgcgcaagagaaac 20873657  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||| || |||||||    
T  20873658 gttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggc 20873757  T
Q  201 tcttgatat 209  Q
    | |||||||    
T  20873758 ttttgatat 20873766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 27987590 - 27987675
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatct 87  Q
    ||||| |||| |||||||||||| ||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  27987590 tttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaaggataatct 27987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 27869099 - 27869020
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaagga 81  Q
    ||||||||||| |||||||||   ||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22865770 - 22865847
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||| ||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  22865770 atttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47549046 - 47548969
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||| ||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  47549046 atttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47553489 - 47553412
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||| ||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  47553489 atttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 18815416 - 18815516
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatg 101  Q
    ||||| |||| |||||||||||| ||||| ||||| || ||||| | | ||||||||||| ||||||||||||||||||| |||||  | ||||||||||    
T  18815416 tttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagaggaatg 18815515  T
Q  102 t 102  Q
    |    
T  18815516 t 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 8457213 - 8457286
Alignment:
Q  8 tggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaagga 81  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||| ||||||||||| ||||||||| |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaagga 8457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 27868976 - 27868912
Alignment:
Q  125 tgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatgg 189  Q
    |||||| |||||||||||||||| ||||| |   | |||||||||||||| |||||| |||||||    
T  27868976 tgtgcgaccttgtgtggtaaggaagaggatatggaccatttgttttttcattgtgatcattatgg 27868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 26077748 - 26077948
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| ||||||    
T  26077748 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggacaatcttcgcaaaaggaat 26077847  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| || ||||||||||| |||||||    
T  26077848 gttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgaatattatggtcgcttatggc 26077947  T
Q  201 t 201  Q
    |    
T  26077948 t 26077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 29532557 - 29532349
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |  |||| ||||||    
T  29532557 atttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaaggaat 29532458  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||||  ||||   |||  ||||||| ||||||||||| |||||||||||||||  |||||||||| |||||||| ||| |||||| |||| | ||||    
T  29532457 gtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatgcgatcattatgatcgactttggc 29532358  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  29532357 tcttgatat 29532349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 31423263 - 31423431
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||  ||||||||||| |||||||||| |||||| |||| ||| ||||||||||     
T  31423263 atttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaacaaagaacaaccttcgcaagaggaac 31423362  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 169  Q
    |||||| | | |||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  31423363 gtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 26390264 - 26390456
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||  ||||| || ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| |  |||  ||||||    
T  26390264 atttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataaggaat 26390363  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcga 193  Q
    ||||||| |||||   |||  |||| |  ||||||||||||||||||||| |||||    |||||||| |||||||| ||| |||||||||||    
T  26390364 gtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtcga 26390456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10801702 - 10801779
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||| ||||| || || |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  10801702 atttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 2959748 - 2959812
Alignment:
Q  137 tgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggct 201  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||| ||||||||    
T  2959748 tgtggtaaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggct 2959812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18295418 - 18295618
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  18295418 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaat 18295517  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||  ||| |||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||    
T  18295518 gttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggc 18295617  T
Q  201 t 201  Q
    |    
T  18295618 t 18295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 667465 - 667283
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  667465 atttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 667366  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcga 193  Q
    || ||| |||||||| ||  |||||||||          |||||||||||||||||  |  ||||||||||||||||||| ||||||||||||    
T  667365 gtacttgaggctacaaatgtttcttgtgc----------ggtaaggaggaggaaagggactatttgttttttcaatgtgactattatggtcga 667283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 28604909 - 28605117
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||||||||||||||| |||| || ||||| ||||| |||||||| ||| |||| |||||| |||||||||| ||||||||||| ||  | ||||||||     
T  28604909 atttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaaggacaacctgcgtaagaggaac 28605008  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    || ||| ||| | |  ||   ||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||| |||||||    
T  28605009 gttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgtttttccaatgtgatcattatggtcggttatggc 28605108  T
Q  201 tcttgatat 209  Q
    |||||||||    
T  28605109 tcttgatat 28605117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 7218372 - 7218576
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||| |  | || ||||||    
T  7218372 atttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaaggaat 7218471  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    ||| || ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||| |||| ||  | |||||||    
T  7218472 gtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattacgggtggttatggc 7218571  T
Q  201 tcttg 205  Q
    |||||    
T  7218572 tcttg 7218576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2894437 - 2894237
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| | || |||||| ||||||||||||||||||| |||||| | |||||||||    
T  2894437 atttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaat 2894338  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
     ||||| |||| ||  ||  ||||||||  || || |||||||| |||||||| |   ||||||||||||| |||||  | ||||||||||| |||||||    
T  2894337 atccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatgcaactattatggtcgtttatggc 2894238  T
Q  201 t 201  Q
    |    
T  2894237 t 2894237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 17228135 - 17228031
Alignment:
Q  2 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaatg 101  Q
    ||||| ||||||||||| ||||| ||||| || ||||| ||||| ||| ||||||||||  ||||||||||||||||||||||| |  |||| |||||||    
T  17228135 tttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaaggacaatttgcgcaaaaggaatg 17228036  T
Q  102 tcctt 106  Q
    |||||    
T  17228035 tcctt 17228031  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 5391672 - 5391727
Alignment:
Q  134 ttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatgg 189  Q
    |||||||||||||| |||||||| ||||| ||||||||| | |||||| |||||||    
T  5391672 ttgtgtggtaaggaagaggaaaggtatcacttgttttttaattgtgatcattatgg 5391727  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5391539 - 5391616
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaa 78  Q
    |||||||||| | ||||||| ||| || || |||||||||||||||||| |  | |||||| |||||||||| |||||    
T  5391539 atttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

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Target: scaffold0003 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 224748 - 224952
Alignment:
Q  1 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggtgtctctttctggatagacttgctacaaaggacaatctttgcaagaggaat 100  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |  | || ||||||    
T  224748 atttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaaggaat 224847  T
Q  101 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattattatggtcgattatggc 200  Q
    |||||| ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||| |||||||  | |||||||    
T  224848 gtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattatgggtggttatggc 224947  T
Q  201 tcttg 205  Q
    |||||    
T  224948 tcttg 224952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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