View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8743_low_1 (Length: 642)

Name: NF8743_low_1
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8743_low_1
NF8743_low_1
[»] chr5 (3 HSPs)
chr5 (90-634)||(35802663-35803202)
chr5 (143-634)||(10520608-10521109)
chr5 (403-634)||(35854104-35854332)
[»] chr4 (10 HSPs)
chr4 (126-253)||(55705573-55705700)
chr4 (126-235)||(45878670-45878779)
chr4 (183-246)||(54304053-54304116)
chr4 (287-326)||(45879155-45879194)
chr4 (132-227)||(56208877-56208972)
chr4 (126-194)||(47293221-47293289)
chr4 (559-625)||(45881915-45881981)
chr4 (468-542)||(54303766-54303840)
chr4 (178-235)||(45860206-45860263)
chr4 (589-634)||(45862385-45862430)
[»] chr8 (1 HSPs)
chr8 (126-253)||(7972415-7972542)
[»] chr2 (2 HSPs)
chr2 (126-227)||(24354011-24354112)
chr2 (541-634)||(24351091-24351184)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 90 - 634
Target Start/End: Original strand, 35802663 - 35803202
Alignment:
Q  90 attgtcaaggttaaagtattgagagagtgttcctcgaattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtat 189  Q
    ||||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  35802663 attgtcaaggttaaagttttgagaaaccgttcctcgaattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtat 35802762  T
Q  190 cctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaagagaactgactgctgcccacattgatagagatgcatgaagaccac 289  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||| |||  ||||| ||||  |||||||||||| | |||    
T  35802763 cctgcacttgttgccgcatcagacattgaagcaatgacgggtttttttgaagcaagagatctgattgcctcccacgttgactgagatgcatgaaaatcac 35802862  T
Q  290 ctccttgactgtcaattcggataatagcagccttgaannnnnnngactctttgaccatatcaatcttcttaatgatattacttgtgac---gccacaacg 386  Q
    |||||  ||||||||| |||| |||| | ||||||||       || |||||||||||| ||||||||| ||||| ||||||||||||   | ||| |      
T  35802863 ctcctacactgtcaatccggacaataaccgccttgaatttttttgaatctttgaccataccaatcttctcaatgaaattacttgtgacgatgtcactatc 35802962  T
Q  387 catggcctctgaggaccggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaa 486  Q
    ||| | | ||||||  |||||||||||||||||||||||||||   ||||||||||   | || ||||||||||| ||||||||||||| ||| ||||||    
T  35802963 catagtccctgaggctcggatgatggctatttgttctttagcc---tctgatattc---ccacagtccattttctgactttagagtattttctaaaagaa 35803056  T
Q  487 atcat---agggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcatttttta 583  Q
    |||||   |||||||||||||||||||||  |||||||||||||||||||||   ||||||||| || |||||| ||||||||||||||||| | ||| |    
T  35803057 atcataggagggagtgatttcaccccaag--tctccttcaagagagtgataa---catcatcatcatacactaagcttgatatgaaaccctcttctttca 35803151  T
Q  584 gtttatctacttgataaacaccttcatttacgaagttttcaacttcttctc 634  Q
    ||||||||| | |||||||||||||||||| |||||||| |||||||||||    
T  35803152 gtttatctaatcgataaacaccttcatttatgaagttttgaacttcttctc 35803202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 143 - 634
Target Start/End: Complemental strand, 10521109 - 10520608
Alignment:
Q  143 taagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaa----------gcaatgacgggtt 232  Q
    ||||||||||||||||||||  ||| |||||  |||||||||||||||||||| ||| ||| |||||||||||||||          |||| ||||||||    
T  10521109 taagattttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaaagacattgaagcaacgacgggtt 10521010  T
Q  233 tttcggaagcaagagaactgactgctgcccacattgatagagatgcatgaagaccacctccttgactgtcaattcggataatagcagccttgaannnnnn 332  Q
    |||| | || |||||| |||| | ||  ||||||| |  ||||  || ||| | ||||||||  ||||||||||||||||||| |||||||||           
T  10521009 tttccgcaggaagagacctgatttctttccacattaactgagaatcacgaacatcacctcctgtactgtcaattcggataataacagccttgatttcttt 10520910  T
Q  333 ngactctttgaccatatcaatcttcttaatgatattacttgtgacgccaca---acgcatggcctctgaggaccggatgatggctatttgttctttagcc 429  Q
     ||| ||||||||||| ||||||||| |||||  |||||||||||   |     || ||| | | |||||   ||||||||||||||||||||||| |||    
T  10520909 tgacgctttgaccataccaatcttctcaatgaacttacttgtgacaatatccgtacccatagtccctgagactcggatgatggctatttgttctttcgcc 10520810  T
Q  430 tcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatttcacccc---aagtctctccttcaaga 526  Q
    |||   |||||||||||    ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||   |||||||| |||||| |    
T  10520809 tct---gatattccaaca---gtccattttctaactttagagtatttttcaaaagaaatcatagggagtgatttcacccccccaagtctcttcttcaaca 10520716  T
Q  527 gagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaac 626  Q
    || ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  10520715 gattgataacctcatgatcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaac 10520616  T
Q  627 ttcttctc 634  Q
    ||||||||    
T  10520615 ttcttctc 10520608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 403 - 634
Target Start/End: Complemental strand, 35854332 - 35854104
Alignment:
Q  403 cggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatt 502  Q
    ||||||||||| ||||||||||||||||||   |||||| | ||    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  35854332 cggatgatggcaatttgttctttagcctct---gatattgccaca---gtccattttctgcctttagagtattttctaaaagaaatcatagggagtgatt 35854239  T
Q  503 tcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgat---- 598  Q
    | |||||||| ||||||||||||||||| ||||| ||||||||   || |||||| ||||||||||||||||| | ||| |||||||||| | |||        
T  35854238 taaccccaagcctctccttcaagagagttataacctcatcatc---atacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaac 35854142  T
Q  599 --aaacaccttcatttacgaagttttcaacttcttctc 634  Q
      ||||||||||||||| ||||| || |||||||||||    
T  35854141 agaaacaccttcatttatgaagtcttgaacttcttctc 35854104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 55705700 - 55705573
Alignment:
Q  126 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 225  Q
    ||||||||||||||| ||||||||||||||||| ||  |||| ||||| ||||||||||| ||||||||| | | |||||| ||| ||||||||||||||    
T  55705700 aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgcactggctgccacgtcatacattgaagcaatg 55705601  T
Q  226 acgggtttttcggaagcaagagaactga 253  Q
    || ||||||| || ||||||||| ||||    
T  55705600 acaggtttttgggcagcaagagacctga 55705573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 45878670 - 45878779
Alignment:
Q  126 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 225  Q
    ||||||||||||||| || ||| ||||||| || |||| ||| ||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  45878670 aattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaatg 45878769  T
Q  226 acgggttttt 235  Q
    || |||||||    
T  45878770 actggttttt 45878779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 54304116 - 54304053
Alignment:
Q  183 gtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaaga 246  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  54304116 gtagtatcctgcacttgttgccacatcagatattgaagcaatgatgggtttttcggcagcaaga 54304053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 45879155 - 45879194
Alignment:
Q  287 cacctccttgactgtcaattcggataatagcagccttgaa 326  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  45879155 cacctcctggactgtcaattcggataatagcagccttgaa 45879194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 56208877 - 56208972
Alignment:
Q  132 accagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgac 227  Q
    ||||||||| |||||||||||||| || |||  ||| ||||| |||||||||| ||||||| || ||| || || || |||||| |||||||||||    
T  56208877 accagttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac 56208972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 47293289 - 47293221
Alignment:
Q  126 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgc 194  Q
    ||||||||||||||| |||||||||||||| || |||  ||| || || ||||||| ||||||||||||    
T  47293289 aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctgc 47293221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 625
Target Start/End: Original strand, 45881915 - 45881981
Alignment:
Q  559 cttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa 625  Q
    |||| |||||||||||| | ||| ||| | ||||||||||| ||||||||||||| |||||| ||||    
T  45881915 cttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagttctcaa 45881981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 542
Target Start/End: Complemental strand, 54303840 - 54303766
Alignment:
Q  468 agagtattctctgaaagaaatcatagggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatc 542  Q
    |||||||||| |||||||||  | ||| ||||||||||||||||| || |||||||||   |||||||| |||||    
T  54303840 agagtattctttgaaagaaacaaaaggcagtgatttcaccccaagcctttccttcaagttggtgataacatcatc 54303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 45860206 - 45860263
Alignment:
Q  178 gccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggttttt 235  Q
    ||||| ||||||||| || | | ||||||||||||||||||||||||||  |||||||    
T  45860206 gccatatagtatcctccactagctgccacatcagacattgaagcaatgattggttttt 45860263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 45862385 - 45862430
Alignment:
Q  589 tctacttgataaacaccttcatttacgaagttttcaacttcttctc 634  Q
    ||||||||||| ||||||||||||| |||||| ||||| |||||||    
T  45862385 tctacttgatagacaccttcatttatgaagttctcaacatcttctc 45862430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 7972415 - 7972542
Alignment:
Q  126 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 225  Q
    ||||||||||||||| ||||| |||||||| || |||  ||| || || ||||||||||||||||||||  |  |||||| |||||||||  |||||||     
T  7972415 aattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaata 7972514  T
Q  226 acgggtttttcggaagcaagagaactga 253  Q
    || ||||||| |||||||||||| ||||    
T  7972515 actggttttttggaagcaagagacctga 7972542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 24354112 - 24354011
Alignment:
Q  126 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 225  Q
    ||||||||||||||| |||||| ||||||| || ||||   | | ||| |||||||||||||||||| || ||| ||||||||||| ||| |||||||||    
T  24354112 aattgaaccagttaaggtaagactttctgcaacaatagcatcagttcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaatg 24354013  T
Q  226 ac 227  Q
    ||    
T  24354012 ac 24354011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 634
Target Start/End: Complemental strand, 24351184 - 24351091
Alignment:
Q  541 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctc 634  Q
    ||||||| || || |||| ||||||| |  ||||| | ||| || ||||| |||||||||||||||||||||| |||||| ||||  |||||||    
T  24351184 tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagttctcaatatcttctc 24351091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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