View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8743_low_13 (Length: 238)
Name: NF8743_low_13
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8743_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 40840839 - 40841059
Alignment:
| Q |
5 |
tattctttagagaaataaatgtataaaattcaatgcattcaaacacactcta--caagttttgtggagcaaaacctgttttttatatagtagtataaaag |
102 |
Q |
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| T |
40840839 |
tattctttagagaaataaatgtataaaattcaatgcattgaaacacactctatacaagttttgtgaagcaaaaactgttttttatatagtagtataaaag |
40840938 |
T |
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| Q |
103 |
tagcaaatcaacaccaatttcagttttttccttaaaataaaaaacatcaatttcagttttactagtctc-tgnnnnnnnnnnaaagaagttttactagtc |
201 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
40840939 |
tagcaaatcaacaccaatttcagttttttcctt-aaatagaaaacatcaatttcagttttactagtctcttttttttttttgaaagaagttttactagtc |
40841037 |
T |
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| Q |
202 |
tctttgttccacaataagtgtt |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
40841038 |
tctttgttccacaataagtgtt |
40841059 |
T |
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