View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8743_low_3 (Length: 537)
Name: NF8743_low_3
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8743_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 41096807 - 41096286
Alignment:
| Q |
1 |
ctttgagggaagcatcaaaagtggaaaaacattcacaccttacaatgtagctcctgcaggctgcaagactatatttttggcaaaacacataaattgttat |
100 |
Q |
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| T |
41096807 |
ctttaagggaagcatcaaaagtggaaaaacattcacaccttacaatgtagctcctgcaggctgcaagactatatttttggcaaaacacataaattgttat |
41096708 |
T |
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| Q |
101 |
aagtgtgatttgtgaagtaaacaaaataaagcacacttgcaatcatataccatttcagccattcatgatagtttttattgataaattccttaatttagat |
200 |
Q |
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| T |
41096707 |
aagtgtgttttgtgaagtaaacaaaataaagcacacttgcaatcatataccatttcagccattcatgatagtttt-attgataaattccttaatttagat |
41096609 |
T |
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| Q |
201 |
tcttaatgtttgatcaaatcaattgtctcagatttcttactagttgagctgagttagttaaatcatgataatatagtggaacactacttccaattcaagg |
300 |
Q |
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| T |
41096608 |
tcttaatgtttgatcaaatcaattgtctcagatttcttactagttgagctgagttagttatatcatgataatatagtggaacactacttccaattcaagg |
41096509 |
T |
|
| Q |
301 |
ctcccttacatgttatcatctgttaacatcaagtttggcagtttgtacttggaactagacaaccattcactaa---ttcaatccccgtcctgcaaagatg |
397 |
Q |
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| T |
41096508 |
ctcccttacatgttatcatctgttaacatcaagtttggcagtttgtactcggaactagacaactattcactaattgttcaatccccgtcctgcaaagatg |
41096409 |
T |
|
| Q |
398 |
tattagattgcttgctccacacaagtcagcagataaacgcggtttatctaattgcaaattcgcataacagccaagcagttatcttaggttgcgaccttag |
497 |
Q |
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| T |
41096408 |
tattagattgcttgctccacacaagtcagcagataaacgcggtttctctaattgcaaattcgcataacagccaagcagttatcttaggttgcgaccttag |
41096309 |
T |
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| Q |
498 |
ttactagttggttgtataatcaa |
520 |
Q |
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| T |
41096308 |
ttactagttggttgtataatcaa |
41096286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 38354671 - 38354626
Alignment:
| Q |
13 |
catcaaaagtggaaaaacattcacaccttacaatgtagctcctgca |
58 |
Q |
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| T |
38354671 |
catcacaagtggaaaaacaatcacatcttacaatgtagctcctgca |
38354626 |
T |
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