View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8743_low_4 (Length: 501)
Name: NF8743_low_4
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8743_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 8641480 - 8641949
Alignment:
| Q |
15 |
acatcattgatggttttgggaacaataacttggaggttggtggtgttctaggtactgcttttgaaaataaatcagttctcaatctatactttcttgacag |
114 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8641480 |
acatcattgatggttttgggaacaataacttggagatcggtggtgttcaaggtactgtctttgaaaataaatcagttctcaatctatactttcttgacag |
8641579 |
T |
|
| Q |
115 |
tggagattattccaaagttccgacgattcatggttatgattggatcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtacta |
214 |
Q |
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| T |
8641580 |
tggagattattccaaagttccgacgattcctggttatgattggatcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtacta |
8641679 |
T |
|
| Q |
215 |
tcacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggc |
314 |
Q |
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| T |
8641680 |
tcacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggc |
8641779 |
T |
|
| Q |
315 |
gccacaaaaagaagctgctcctggtcttgcatactttcacatccccttgccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaa |
414 |
Q |
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| T |
8641780 |
gccacaaaaagaagctgctcctggtcttgcatactttcacatccccttaccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaa |
8641879 |
T |
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| Q |
415 |
atggatggcggtgatggcattggttctgcttcagtgaactctggtttcttcacaaccttggttggagcag |
484 |
Q |
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| T |
8641880 |
acatatagcggtgatggcattagttctgcgtcggtgaactctggtttcttcacaaccttggtcggagcag |
8641949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 8648060 - 8648529
Alignment:
| Q |
15 |
acatcattgatggttttgggaacaataacttggaggttggtggtgttctaggtactgcttttgaaaataaatcagttctcaatctatactttcttgacag |
114 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648060 |
acatcattgatggttttgggaacaataacttggagatcggtggtgttcaaggtactgtctttgaaaataaatcagttctcaatctatactttcttgacag |
8648159 |
T |
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| Q |
115 |
tggagattattccaaagttccgacgattcatggttatgattggatcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtacta |
214 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648160 |
tggagattattccaaagttccgacgattcctggttatgattggatcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtacta |
8648259 |
T |
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| Q |
215 |
tcacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648260 |
tcacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggc |
8648359 |
T |
|
| Q |
315 |
gccacaaaaagaagctgctcctggtcttgcatactttcacatccccttgccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648360 |
gccacaaaaagaagctgctcctggtcttgcatactttcacatccccttaccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaa |
8648459 |
T |
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| Q |
415 |
atggatggcggtgatggcattggttctgcttcagtgaactctggtttcttcacaaccttggttggagcag |
484 |
Q |
| |
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| || |||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
8648460 |
acatatagcggtgatggcattagttctgcgtcggtgaactctggtttcttcacaaccttggtcggagcag |
8648529 |
T |
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