View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8743_low_6 (Length: 369)
Name: NF8743_low_6
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8743_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 44729947 - 44729612
Alignment:
| Q |
1 |
ttgtaaggattttgaagaaaaagaacgttgaaattggagaatatgaaactagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgcc |
100 |
Q |
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| T |
44729947 |
ttgtaaggtttttgaagaaaaagaaagttgaaattggagaagttgaaactagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgcc |
44729848 |
T |
|
| Q |
101 |
agaaatgatggaggaaagagcagagtatttgaatttgagtaggcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaaggtt |
200 |
Q |
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| T |
44729847 |
agaaatgatggaggaaagagcagagtatttgaatttgagtaggcaattatcagggaaagggtggaagcctagcttggatacaattaaggaaaagaaggtt |
44729748 |
T |
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| Q |
201 |
aagagaaagatatctggttggttattccttacaagttttattggtgcaaagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttg |
300 |
Q |
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| T |
44729747 |
aagagaaagatatctggttggttattccttacaagttttattggtgcaaagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttg |
44729648 |
T |
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| Q |
301 |
gttttaattgttagttatgttatattggcacttctg |
336 |
Q |
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| T |
44729647 |
gttttaattgttagttatgttatattggcacttctg |
44729612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 39084251 - 39084314
Alignment:
| Q |
133 |
atttgagtaggcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaa |
196 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
39084251 |
atttgaataggcagatttcagggaaagggtggaagcctagcttggatactattaaggagaagaa |
39084314 |
T |
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