View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8743_low_8 (Length: 288)
Name: NF8743_low_8
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8743_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 19211144 - 19210922
Alignment:
| Q |
17 |
catcatccaaacatcaccaacaaacacaactgtttatcatcagtgcaacgatataaggtgtgtagagtcggcccgtttaggacacgcaccccacggacac |
116 |
Q |
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| T |
19211144 |
catcatccaaacatcaccaacaaacacaactgttcatcatcaacgcaacgatataaaatgtgtagagttggcccgtttaggacaagcgccccacggacat |
19211045 |
T |
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| Q |
117 |
gggcaaaccacaccacttacaattcactacccacaaagtattcccaaaagggacattcacataaattagatttcataatatgatcatcagatttattcgt |
216 |
Q |
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| T |
19211044 |
gggcaaaccacaccacttacaattcactacccacaaagtattcccaaaaaggacattcacataaattagatttcataatatgatcatcagatttattagt |
19210945 |
T |
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| Q |
217 |
tttttcgttcattcatcatcgtg |
239 |
Q |
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| T |
19210944 |
tttttcgttcattcatcatcgtg |
19210922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 19210907 - 19210874
Alignment:
| Q |
238 |
tgagtgtgagtatacccaaaacacagttgacaat |
271 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19210907 |
tgagtgtgagtatacccaaaacacagttgacaat |
19210874 |
T |
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