View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8743_low_9 (Length: 276)

Name: NF8743_low_9
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8743_low_9
NF8743_low_9
[»] chr8 (10 HSPs)
chr8 (22-258)||(38543408-38543641)
chr8 (22-68)||(38544328-38544374)
chr8 (23-70)||(10500953-10501000)
chr8 (21-91)||(788025-788095)
chr8 (24-91)||(31694164-31694231)
chr8 (22-69)||(40647180-40647227)
chr8 (21-70)||(5873163-5873213)
chr8 (22-71)||(5875180-5875229)
chr8 (21-70)||(10501912-10501961)
chr8 (22-62)||(35885336-35885376)
[»] chr5 (8 HSPs)
chr5 (21-74)||(1282253-1282306)
chr5 (22-88)||(1282949-1283015)
chr5 (22-62)||(30002864-30002904)
chr5 (22-62)||(42310849-42310889)
chr5 (158-231)||(26712217-26712293)
chr5 (158-231)||(26981955-26982031)
chr5 (22-88)||(6353684-6353750)
chr5 (52-90)||(32943547-32943585)
[»] chr4 (7 HSPs)
chr4 (22-91)||(5825334-5825403)
chr4 (19-70)||(24471827-24471878)
chr4 (22-71)||(35428158-35428207)
chr4 (52-91)||(33370854-33370893)
chr4 (52-90)||(33369939-33369977)
chr4 (20-72)||(17978261-17978313)
chr4 (22-70)||(38320420-38320468)
[»] chr3 (8 HSPs)
chr3 (23-71)||(51492456-51492504)
chr3 (22-71)||(42146800-42146848)
chr3 (22-71)||(42147547-42147596)
chr3 (22-70)||(7359842-7359890)
chr3 (22-70)||(46580364-46580412)
chr3 (20-70)||(23379330-23379380)
chr3 (22-68)||(50306525-50306571)
chr3 (21-69)||(53714486-53714534)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-71)||(67247-67296)
[»] chr7 (6 HSPs)
chr7 (22-71)||(9378729-9378778)
chr7 (30-70)||(34996885-34996925)
chr7 (52-91)||(32548652-32548691)
chr7 (21-71)||(9379794-9379844)
chr7 (22-71)||(34853333-34853382)
chr7 (22-70)||(36661685-36661733)
[»] chr1 (11 HSPs)
chr1 (23-88)||(4124701-4124766)
chr1 (21-74)||(4125413-4125466)
chr1 (22-71)||(15374696-15374745)
chr1 (22-68)||(15373957-15374003)
chr1 (22-71)||(46358608-46358657)
chr1 (22-71)||(51610220-51610269)
chr1 (22-74)||(49959954-49960006)
chr1 (22-68)||(3788435-3788481)
chr1 (22-71)||(51977197-51977246)
chr1 (21-69)||(13536997-13537045)
chr1 (52-88)||(31788258-31788294)
[»] chr2 (5 HSPs)
chr2 (22-91)||(9371821-9371890)
chr2 (21-62)||(42946477-42946518)
chr2 (22-68)||(26021913-26021959)
chr2 (20-72)||(2992000-2992052)
chr2 (22-70)||(5505220-5505268)
[»] chr6 (1 HSPs)
chr6 (22-68)||(3802812-3802858)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 38543408 - 38543641
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagatcaactgtcttattgtgtatcgtcaatattagat 121  Q
    ||||||||||| ||||| |||| | |||| ||||||||||||| |||||||||||||||  ||||||||| |||||||||||||| |||||||| |||||    
T  38543408 ggtggcatttaaggtggaaatgggtaagaatttcccaccatgg-aaagttaatgctaactcttagatcaattgtcttattgtgtaccgtcaatactagat 38543506  T
Q  122 tatttttccatcatcttctaacattgtctctctcgttcaatgccatttcacattcaatcttcaactcacaaaattaaaattcaacaattacagaaataaa 221  Q
    ||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38543507 tatttttccattatcttctaacaccgtctctctcgttcaatgtcatttcacattcaatcttcaactcacaaaattaaaattcaacaattacagaaataaa 38543606  T
Q  222 aaactcttcatcatctataattcagaaaccaaattaa 258  Q
    |||  |||||||| |||||||||||||||||||||||    
T  38543607 aaa--cttcatcacctataattcagaaaccaaattaa 38543641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 38544374 - 38544328
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaa 68  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  38544374 ggtggcatttagggtgggaatgagaaatatttttccaccatgggaaa 38544328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 10500953 - 10501000
Alignment:
Q  23 gtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||    
T  10500953 gtggcatttagggtgggaatggaaaagatttttccaccatgggaaagt 10501000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 788025 - 788095
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagatcaa 91  Q
    ||||||||||||||||||||||| |||| | ||||||||||| | ||||||  | || |||||||||||||    
T  788025 tggtggcatttagggtgggaatgggaaaaagtttcccaccatagcaaagttttttctgaccattagatcaa 788095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 31694164 - 31694231
Alignment:
Q  24 tggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagatcaa 91  Q
    |||||||||||||||| | | | |||||||||||||||| ||||||||||   |||| ||||||||||    
T  31694164 tggcatttagggtgggtagggggaagattttcccaccataggaaagttaaatttaacgattagatcaa 31694231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 40647227 - 40647180
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaag 69  Q
    |||| ||||||||||||| | |||||||||||||| ||||||||||||    
T  40647227 ggtgccatttagggtgggtaggagaaagattttcctaccatgggaaag 40647180  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 5873163 - 5873213
Alignment:
Q  21 tggtggcattt-agggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    ||||||||||| ||||||||||||||||||| ||||| || ||||||||||    
T  5873163 tggtggcattttagggtgggaatgagaaagagtttccaactatgggaaagt 5873213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 5875229 - 5875180
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||||| | |||| ||| |||| |||||||||||    
T  5875229 ggtggcatttagggtgggaatggggaagagttttccactatgggaaagtt 5875180  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 10501961 - 10501912
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    ||||||||||||||||||||| |  ||||||||| | |||||||||||||    
T  10501961 tggtggcatttagggtgggaagggaaaagatttttctaccatgggaaagt 10501912  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 35885336 - 35885376
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccat 62  Q
    ||||||||||||||||||||||  ||||| |||||||||||    
T  35885336 ggtggcatttagggtgggaatggaaaagagtttcccaccat 35885376  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 1282253 - 1282306
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaat 74  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  1282253 tggtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttaat 1282306  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 1283015 - 1282949
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagat 88  Q
    |||| ||||||||||||||||| |||||| |||||||| |||||||||||  | || ||||||||||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagat 1282949  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccat 62  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 42310849 - 42310889
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccat 62  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42310889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 26712293 - 26712217
Alignment:
Q  158 tcaatgccatttcacattcaatcttcaactcacaaaattaaaattcaa-----caattacagaaataaaaaactcttca 231  Q
    |||||||||| |||||||||||||||||||  || |||||||| ||||     ||||||||||||| ||||||||||||    
T  26712293 tcaatgccatgtcacattcaatcttcaact--cagaattaaaactcaacaattcaattacagaaattaaaaactcttca 26712217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 26982031 - 26981955
Alignment:
Q  158 tcaatgccatttcacattcaatcttcaactcacaaaattaaaattcaa-----caattacagaaataaaaaactcttca 231  Q
    |||||||||| |||||||||||||||||||  || |||||||| ||||     ||||||||||||| ||||||||||||    
T  26982031 tcaatgccatgtcacattcaatcttcaact--cagaattaaaactcaacaattcaattacagaaattaaaaactcttca 26981955  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 6353684 - 6353750
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagat 88  Q
    ||||||||||||||||||   | |||||||||||||| ||| ||||||| |||  ||||||||||||    
T  6353684 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaagtaaattttaaccattagat 6353750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 32943547 - 32943585
Alignment:
Q  52 tttcccaccatgggaaagttaatgctaaccattagatca 90  Q
    |||||||||||||||||||||||| || |||||||||||    
T  32943547 tttcccaccatgggaaagttaatgttagccattagatca 32943585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 5825334 - 5825403
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagatcaa 91  Q
    |||||||||||||||||||||| |||||| ||||||||||| | ||||||  | ||||||||||||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagttttttctaaccattagatcaa 5825403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 24471827 - 24471878
Alignment:
Q  19 tttggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    |||||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  24471827 tttggtggcatttagggtgggaatggaaaagagtttcccaccataggaaagt 24471878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 35428207 - 35428158
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||||| | |||| |||||||| |||||||||||    
T  35428207 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagtt 35428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 33370893 - 33370854
Alignment:
Q  52 tttcccaccatgggaaagttaatgctaaccattagatcaa 91  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  33370893 tttcccaccatgggaaagttaatgttagccattagatcaa 33370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 33369939 - 33369977
Alignment:
Q  52 tttcccaccatgggaaagttaatgctaaccattagatca 90  Q
    |||||||||||||||||||||||| || |||||||||||    
T  33369939 tttcccaccatgggaaagttaatgttagccattagatca 33369977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 17978261 - 17978313
Alignment:
Q  20 ttggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtta 72  Q
    ||||||||||||||||||||   | |||||| ||||||| |||||||||||||    
T  17978261 ttggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagtta 17978313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 38320420 - 38320468
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    ||||||||||||||||||||   |||||| |||||||||| ||||||||    
T  38320420 ggtggcatttagggtgggaagaggaaagagtttcccaccacgggaaagt 38320468  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 51492504 - 51492456
Alignment:
Q  23 gtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagtt 51492456  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 42146800 - 42146848
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  42146800 ggtggcatttagggtggga-tgggaaagattttcccaccatgggaaagtt 42146848  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 42147596 - 42147547
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagtt 42147547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 7359890 - 7359842
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    |||||||||||||||||| | ||| |||| |||||||||||||||||||    
T  7359890 ggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 46580364 - 46580412
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    |||||||||||||||||| | |||||||||||||| ||||||| |||||    
T  46580364 ggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 23379330 - 23379380
Alignment:
Q  20 ttggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    |||||||||||||||||||| | | ||||||||||||||| || |||||||    
T  23379330 ttggtggcatttagggtgggtaagggaaagattttcccactataggaaagt 23379380  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 50306571 - 50306525
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaa 68  Q
    |||||||||||||||||||| | |||||| ||||||||||| |||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 53714486 - 53714534
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaag 69  Q
    |||||||||||||||||||   | |||||| ||||||||||||||||||    
T  53714486 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 53714534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 67247 - 67296
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagtt 67296  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 9378729 - 9378778
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagtt 9378778  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 34996885 - 34996925
Alignment:
Q  30 ttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagt 34996925  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 32548691 - 32548652
Alignment:
Q  52 tttcccaccatgggaaagttaatgctaaccattagatcaa 91  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  32548691 tttcccaccatgggaaagttaatgttagccattagatcaa 32548652  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 9379844 - 9379794
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    ||||||||||||||||||||  | |||||||||| |||| |||||||||||    
T  9379844 tggtggcatttagggtgggatggggaaagatttttccactatgggaaagtt 9379794  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 34853382 - 34853333
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||| | ||| |||| ||||||||||| ||||||||    
T  34853382 ggtggcatttagggtgggtaggaggaagactttcccaccataggaaagtt 34853333  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 36661685 - 36661733
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    ||||||||||||||||||   | |||||| |||||||||||||||||||    
T  36661685 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagt 36661733  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 4124701 - 4124766
Alignment:
Q  23 gtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagat 88  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||  | || ||||||||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagat 4124766  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 4125466 - 4125413
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaat 74  Q
    ||||||||||||||||||||||| |||||| |||||||| || |||||||||||    
T  4125466 tggtggcatttagggtgggaatgggaaagagtttcccactataggaaagttaat 4125413  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 15374745 - 15374696
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagtt 15374696  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 15373957 - 15374003
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaa 68  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgggaaa 15374003  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 46358657 - 46358608
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  46358657 ggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagtt 46358608  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 51610269 - 51610220
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    |||||||||||||||||| | ||| || ||||||||||||||||||||||    
T  51610269 ggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 49959954 - 49960006
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaat 74  Q
    ||||||||||||||||| ||||||||||| ||||| || || |||||||||||    
T  49959954 ggtggcatttagggtggaaatgagaaagagtttcctactataggaaagttaat 49960006  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 3788435 - 3788481
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaa 68  Q
    |||||||||||||||||||| | |||||| ||||||||||| |||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 51977246 - 51977197
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtt 71  Q
    ||||||||||||||||| |||| |||||| ||| |||| |||||||||||    
T  51977246 ggtggcatttagggtggaaatgggaaagagttttccactatgggaaagtt 51977197  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 13537045 - 13536997
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccatgggaaag 69  Q
    |||||||||||||||||||   | |||||| ||||||||||||||||||    
T  13537045 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 13536997  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 31788294 - 31788258
Alignment:
Q  52 tttcccaccatgggaaagttaatgctaaccattagat 88  Q
    |||||||||||||||||||||||  ||||||||||||    
T  31788294 tttcccaccatgggaaagttaattttaaccattagat 31788258  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 9371890 - 9371821
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagttaatgctaaccattagatcaa 91  Q
    ||||| ||||| |||||||| | |||||||||||||||||| ||||| ||||   |||||||||||||||    
T  9371890 ggtggtatttaaggtgggaacgggaaagattttcccaccataggaaaattaaatttaaccattagatcaa 9371821  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 42946518 - 42946477
Alignment:
Q  21 tggtggcatttagggtgggaatgagaaagattttcccaccat 62  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  42946518 tggtggcatttagggtgggaatgggaaagagtttcccaccat 42946477  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaa 68  Q
    |||||||||||||||||||| | |||||| ||||||||||| |||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 2992000 - 2992052
Alignment:
Q  20 ttggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagtta 72  Q
    ||||||||||||||||||||   | |||||| ||||||| |||||||||||||    
T  2992000 ttggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagtta 2992052  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 5505268 - 5505220
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaagt 70  Q
    ||||||||||||||||||||   |||||| ||| |||||||||||||||    
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccatgggaaagt 5505220  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 3802858 - 3802812
Alignment:
Q  22 ggtggcatttagggtgggaatgagaaagattttcccaccatgggaaa 68  Q
    |||||||||||||||||||||| |||||| |||| ||| ||||||||    
T  3802858 ggtggcatttagggtgggaatgggaaagaatttctcactatgggaaa 3802812  T

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