View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8744_high_6 (Length: 274)
Name: NF8744_high_6
Description: NF8744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8744_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 10660496 - 10660323
Alignment:
| Q |
96 |
catttctctaaaataataaaatcaaataagtgagtggaagttcaacaattgtaatcatttttatgggaaatgatatcaacctgtcaacgtatattatttc |
195 |
Q |
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| T |
10660496 |
catttctctaaaataataaaatcaaataagagagtggaagttcaacaattgcaatcatttttatgggaaatgatatcaacctttcaacgtatattatttc |
10660397 |
T |
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| Q |
196 |
tattatctcaggcaaatgaacattccaactatttgactaagctatatttctagtagttctctctg-cttctcca |
268 |
Q |
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| T |
10660396 |
tattatctcaggcaaatgaacattccaactatttgactaagctatctttctagtagttctctctgacttctcca |
10660323 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 10660621 - 10660538
Alignment:
| Q |
1 |
cttctaacatatgcacaacgcgttcaactacttgagaatttgtttcattgacttagcttgttgccacattttcaaatatattta |
84 |
Q |
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| T |
10660621 |
cttctaacatatgcacaacgcgttcaactatttgagaatttgtttcattgacttagcttgttgccacattttcaaatatattta |
10660538 |
T |
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