View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8744_low_1 (Length: 588)
Name: NF8744_low_1
Description: NF8744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8744_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 574
Target Start/End: Complemental strand, 8572995 - 8572433
Alignment:
| Q |
8 |
ttggtgttaatatgtgttagtgtttacctctttgccatcactacaactattattgttgctgaagatccatacaggttcttcaactggaacgttacctatg |
107 |
Q |
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| T |
8572995 |
ttggtgttattatgtgttagtgtttacctctttgccatcactacaactattattgttgctgaagatccatacaggttcttcaactggaacgttacctatg |
8572896 |
T |
|
| Q |
108 |
gtgacatttatccacttggtgttcgccaacaggtatatttatattctcactttcatccttataccttatcggatctgagtcattgtgattaatttgtgac |
207 |
Q |
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| T |
8572895 |
gtgacatttatccacttggtgttcgccaacaggtatatttatattctcactttcatccttataccttatcggatctgagtcattgtgattaatttgtgac |
8572796 |
T |
|
| Q |
208 |
acacatgcagggaatacttatcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggat |
307 |
Q |
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| T |
8572795 |
acacatgcagggaatacttatcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggat |
8572696 |
T |
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| Q |
308 |
gaaccttttctcatttcatggttagtacttttcacatttcctatataatttctataccatatgatatgtataaataacaaaaagaattaaacacgaaagc |
407 |
Q |
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| T |
8572695 |
gaaccttttctcatttcatggttagtacctttcacatttcctatataatttctataccatatgatatgtataaataacaaaaagaattaaacacgaaagc |
8572596 |
T |
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| Q |
408 |
atgttatgttattagagttggtttcttttaatgatgttcctgttagttagtatatattcatattcatcatactatttagtactacattttgggatgtttg |
507 |
Q |
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| T |
8572595 |
atgttatgttattatagttggtttcttttaatgatgttcctgttagttagtatatattcatattcatcatactatttagtactacattttgggatgtttg |
8572496 |
T |
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| Q |
508 |
tttgtttgttgggtcacaccacttgtactgtgttgtgtggctgcaaagaataggaaaatgatgaaac |
574 |
Q |
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| T |
8572495 |
tt----tgttgggtcacaccacttgtactgtgttgtgtggctgcaaaggataggaaaatgatgaaac |
8572433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 227 - 329
Target Start/End: Complemental strand, 53755855 - 53755753
Alignment:
| Q |
227 |
atcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcat |
326 |
Q |
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||||||||||||||||| || ||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||| ||||||| |||||||| |||| |
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| T |
53755855 |
atcaatggccaattccctggtccagacattcattctgttacaaacgacaacctcattatcaatgtcttcaacagtttgaatgaaccctttctcatctcat |
53755756 |
T |
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| Q |
327 |
ggt |
329 |
Q |
| |
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||| |
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| T |
53755755 |
ggt |
53755753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 53756069 - 53756002
Alignment:
| Q |
65 |
gctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccacttggtgttcg |
132 |
Q |
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| T |
53756069 |
gctgaagatccctataaattcttcaactggaatgttacttacggtgacatttacccacttggagttcg |
53756002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 17138946 - 17138878
Alignment:
| Q |
263 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggtta |
331 |
Q |
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| T |
17138946 |
gtgactaatgataatttgattatcaatgttttcaacagcttggatgaacctttcctcatttcttggtta |
17138878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 17345571 - 17345641
Alignment:
| Q |
263 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggttagt |
333 |
Q |
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||||| ||||||||| | ||||||||||| || || ||||||||||||||||| |||||||| |||||||| |
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| T |
17345571 |
gtgactaatgataatttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt |
17345641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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