View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8744_low_4 (Length: 362)
Name: NF8744_low_4
Description: NF8744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8744_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 91 - 346
Target Start/End: Complemental strand, 14024289 - 14024034
Alignment:
| Q |
91 |
atctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttcaataaaggctactggatagtgtgttgtggatcatattaaggt |
190 |
Q |
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| T |
14024289 |
atctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttcaatcaaggctactggatagtgtgttgtggatcatattaaggt |
14024190 |
T |
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| Q |
191 |
gtgcaagaaagtccttctccatgaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgatttctcct |
290 |
Q |
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| T |
14024189 |
gtgcaagaaagtccttctccacgaagataaatagtatctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgatttctcct |
14024090 |
T |
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| Q |
291 |
tgcccccaatatgtctcaaagaactttatttgtctagattacacaatcaggatgtg |
346 |
Q |
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| T |
14024089 |
tgcccccaatatgtctcaaagaactttatttgtgtagattacacaatcaggatgtg |
14024034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 333
Target Start/End: Original strand, 13876272 - 13876392
Alignment:
| Q |
213 |
gaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgatttctccttgcccccaatatgtctcaaaga |
312 |
Q |
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| T |
13876272 |
gaagatgaatggtttatcctcttttatgaatgttttgcgaattatttgcattgtaactctagtaagatgatttcttcttacctccaacatgtctcaaaac |
13876371 |
T |
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| Q |
313 |
actttatttgtctagattaca |
333 |
Q |
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| T |
13876372 |
acttgatttgtcttgattaca |
13876392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 14109124 - 14109060
Alignment:
| Q |
246 |
tttgtgaattatttcccttgtaactctaggaagatgatttctccttgcccccaatatgtctcaaa |
310 |
Q |
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| T |
14109124 |
tttgtgaattatttgctttgtaactctagaaagatgatttctccttgctcccaacatgtctcaaa |
14109060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 13863775 - 13863847
Alignment:
| Q |
218 |
taaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgatttctcct |
290 |
Q |
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| T |
13863775 |
taaatggtttctcctcttttatgaatgttttgtgaattatttgcattgtaactctagtaagatgatttctcct |
13863847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 14106399 - 14106330
Alignment:
| Q |
213 |
gaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatga |
282 |
Q |
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| T |
14106399 |
gaagatgaatggtttctcctcttttatgaatgttttgtgaattattttcattgtaactctaggaagatga |
14106330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 14046096 - 14045998
Alignment:
| Q |
213 |
gaagataaatagtttctcctctttat-tgaaggctttgtgaattatttcccttgtaactctaggaagatgatttctccttgcccccaatatgtctcaaa |
310 |
Q |
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| T |
14046096 |
gaagataaatggtttctcttctttttatgaatggtttgtgaattgtttgcattgtaaatctaggaacatgatttctcctcgctcccaacatgtttcaaa |
14045998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 14021331 - 14021267
Alignment:
| Q |
246 |
tttgtgaattatttcccttgtaactctaggaagatgatttctccttgcccccaatatgtctcaaa |
310 |
Q |
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| T |
14021331 |
tttgtgaattatttgcattgtaaatctaggaacatgatttctcctcgctcctaacatgtctcaaa |
14021267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 14106509 - 14106451
Alignment:
| Q |
91 |
atctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttca |
149 |
Q |
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| T |
14106509 |
atctaaggtggttaacactcaaactattatatagggtggcaaaatggtgtgcatcttca |
14106451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 14083380 - 14083283
Alignment:
| Q |
246 |
tttgtgaattatttcccttgtaactctaggaagatgatttctccttgcccccaatatgtctcaaagaactttatttgtctagattacacaatcaggat |
343 |
Q |
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| T |
14083380 |
tttgtgaattatttgctttgttactctagtatgatgatttctcctccctgacaacatgtctcaaaacacttgatttgtcttgattatacaatctggat |
14083283 |
T |
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