View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8744_low_7 (Length: 267)
Name: NF8744_low_7
Description: NF8744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8744_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 28612736 - 28612987
Alignment:
| Q |
1 |
tcattattaaatctagggctagactctgataataattgatcatgacttatagcataaca---acaatttggagcaggacaccacttcaatttcctatcac |
97 |
Q |
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| T |
28612736 |
tcattattaaatctagggctagactctgataataattgatcatgacttatagcataacaacaacaatttggagcaggacaccacttcaatttcctatcac |
28612835 |
T |
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| Q |
98 |
tgttgttttccacgtaagaccgaaagaaaaattgatcatatttaatctttcttgacttacttgcaagttgatgaatcatgtcttgatcaacagctgcatt |
197 |
Q |
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| T |
28612836 |
tgttgttttccacgtaagaccgaaagaaaaattgatcatatttaatctttcttgacttacttgcaagttgatgaatcatgtcttgatcaacagctgcatt |
28612935 |
T |
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| Q |
198 |
acaagaaggttgagggcatctaagcttgaaacagttaagatcatcgatgttt |
249 |
Q |
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| T |
28612936 |
acaagaaggttgagggcatctaagtttgaaacagttaagatcatcgatgttt |
28612987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 28604043 - 28604248
Alignment:
| Q |
40 |
tcatgacttatagcataacaacaatttggagcaggacaccacttcaatttcctatcactgttgttttccacgtaagaccgaaagaaaaattgatcatatt |
139 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||||||||||||| | | | |||||||||| || ||||| ||||||||||||||||| |||| |
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| T |
28604043 |
tcataacttatagcattacaacaatctggagcaggacaccacttcaatttcatgttattgttgttttcaacataagaacgaaagaaaaattgatcgtatt |
28604142 |
T |
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| Q |
140 |
taatctttcttgacttacttgcaagttgatgaatcatgtcttgatcaacagctgcattacaagaaggttgagggcatctaagcttgaaacagttaagatc |
239 |
Q |
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| T |
28604143 |
taatctttcttgactcacttgctaattgttgaatcatgtcttcatctacagctgcattacaagaaggctcagggcatttgagtttgaagcagttatgatc |
28604242 |
T |
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| Q |
240 |
atcgat |
245 |
Q |
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|||||| |
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| T |
28604243 |
atcgat |
28604248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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