View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8745_low_3 (Length: 303)
Name: NF8745_low_3
Description: NF8745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8745_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 8404709 - 8404425
Alignment:
| Q |
15 |
tattacaaaagattattgaaaccataaataaactacacgaaaatgatcatggtgattatgatgaaagtatatataattcttcaaaatttaatattactac |
114 |
Q |
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| T |
8404709 |
tattacaaaagattattgaaaccataaataaactacacgaaaatgatcatggtgattatgatgaaagtatatataattcttcaaattttaatattactac |
8404610 |
T |
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| Q |
115 |
tataaaactct--gcgatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaac |
212 |
Q |
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| T |
8404609 |
tataaaactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaac |
8404510 |
T |
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| Q |
213 |
tccatcaacatgataacactcacagcttcaacaatatctgctattgcatgttgttttgattctgatgcaccccttctggctttga |
297 |
Q |
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| T |
8404509 |
tccatcaacatgataacactcacagcttcaacaatgtctgctattgcatgttgttttgattctgatgcaccccttctggctttga |
8404425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 8368908 - 8368812
Alignment:
| Q |
139 |
ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac |
235 |
Q |
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| T |
8368908 |
ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8368812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 8400502 - 8400598
Alignment:
| Q |
139 |
ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac |
235 |
Q |
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| T |
8400502 |
ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8400598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 8422079 - 8422175
Alignment:
| Q |
139 |
ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac |
235 |
Q |
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| T |
8422079 |
ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8422175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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