View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8745_low_5 (Length: 237)
Name: NF8745_low_5
Description: NF8745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8745_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 24558193 - 24558295
Alignment:
| Q |
111 |
cgtatgaaccttggaaaggtgatgaagagttgaaaagcgactaatggggtttgaagaaaacgttgaaaagtggccgcgtgtttagggtttacctgactct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24558193 |
cgtatgaaccttggaaaggtgatgaagagttgaaaagcggcgaatggggtttgaagaaaacgttgaaaagtggctgcgtgtttagggtttacctgactct |
24558292 |
T |
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| Q |
211 |
gtg |
213 |
Q |
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||| |
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| T |
24558293 |
gtg |
24558295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 24555140 - 24555242
Alignment:
| Q |
111 |
cgtatgaaccttggaaaggtgatgaagagttgaaaagcgactaatggggtttgaagaaaacgttgaaaagtggccgcgtgtttagggtttacctgactct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
24555140 |
cgtatgaaccttggaaaggtgatgaagagttgaaaagcggcgaatggggtttgaagaaaacgttgaaaagtggctgcgtgtgtagggtttacctgactct |
24555239 |
T |
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| Q |
211 |
gtg |
213 |
Q |
| |
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||| |
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| T |
24555240 |
gtg |
24555242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 24552055 - 24552156
Alignment:
| Q |
111 |
cgtatgaaccttggaaaggtgatgaagagttgaaaagcgactaatggggtttgaagaaaacgttgaaaagtggccgcgtgtttagggtttacctgactct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
24552055 |
cgtatgaaccttggaaaggtgatgaagagttgaaaagcggcgaatggggtttgaagaaaacgttgaaaagtggctgtgtgtttagggtttacctgactct |
24552154 |
T |
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| Q |
211 |
gt |
212 |
Q |
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|| |
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| T |
24552155 |
gt |
24552156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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