View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8746_high_4 (Length: 446)
Name: NF8746_high_4
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 36427910 - 36427489
Alignment:
| Q |
19 |
aaggccgaaaaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgttt |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36427910 |
aaggcagaaaaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgttt |
36427811 |
T |
|
| Q |
119 |
gagtgaatagcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgtgtgtggtggatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36427810 |
gagtgaatagcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgtgtgtggtggatt |
36427711 |
T |
|
| Q |
219 |
gatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttgctttcaaggctttgaaagttgag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36427710 |
gatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttgctttcaaggctttgaaagttgag |
36427611 |
T |
|
| Q |
319 |
ggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagtgaggatgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36427610 |
ggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagtgaggatgt |
36427511 |
T |
|
| Q |
419 |
ctggatcaccagctagtattat |
440 |
Q |
| |
|
||||||||| ||||||| |||| |
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| T |
36427510 |
ctggatcactagctagtgttat |
36427489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 36421413 - 36420999
Alignment:
| Q |
19 |
aaggccgaaaaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgttt |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
36421413 |
aaggccgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccaggttgtagtgtct |
36421314 |
T |
|
| Q |
119 |
gagtgaatagcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgtgtgtggtggatt |
218 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36421313 |
gagtgaatagcttattggttgtgtcaacaaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtatgtggtggatt |
36421214 |
T |
|
| Q |
219 |
gatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttgctttcaaggctttgaaagttgag |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| || |||| |||| |
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|
| T |
36421213 |
gatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttgctttcaatgccacgaaaaatgag |
36421114 |
T |
|
| Q |
319 |
ggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagtgaggatgt |
418 |
Q |
| |
|
|| |||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
36421113 |
ggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtgaggatgt |
36421014 |
T |
|
| Q |
419 |
ctggatcaccagcta |
433 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
36421013 |
ccggatcaccagcta |
36420999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 36424937 - 36424516
Alignment:
| Q |
19 |
aaggccgaaaaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgttt |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36424937 |
aaggccgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgttt |
36424838 |
T |
|
| Q |
119 |
gagtgaatagcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgtgtgtggtggatt |
218 |
Q |
| |
|
||||| ||||||| || || ||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36424837 |
gagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtgtgtggtggatt |
36424738 |
T |
|
| Q |
219 |
gatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttgctttcaaggctttgaaagttgag |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| || |||| |||| |
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|
| T |
36424737 |
gatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttgctttcaatgccacgaaaaatgag |
36424638 |
T |
|
| Q |
319 |
ggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagtgaggatgt |
418 |
Q |
| |
|
|| |||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |
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|
| T |
36424637 |
ggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaaggatgt |
36424538 |
T |
|
| Q |
419 |
ctggatcaccagctagtattat |
440 |
Q |
| |
|
||||||||||||||||| |||| |
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|
| T |
36424537 |
ctggatcaccagctagtgttat |
36424516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 19144560 - 19144695
Alignment:
| Q |
178 |
aagagtagctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctg |
277 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||| ||| | |||| || || ||||||||||||| ||||||||||| | | | || |
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|
| T |
19144560 |
aagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttggaattgaagagcagcatatgacacactttgtccattcaatgatg |
19144659 |
T |
|
| Q |
278 |
gaaattctgctttgcttgctttcaaggctttgaaag |
313 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||| |
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|
| T |
19144660 |
gaaattctgccatgcttgcttttattgctttgaaag |
19144695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 313
Target Start/End: Complemental strand, 19148433 - 19148298
Alignment:
| Q |
178 |
aagagtagctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctg |
277 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||| ||| | |||| || || ||||||||||||| ||||||||||| | | | || |
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|
| T |
19148433 |
aagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttggaattgaagagcagcatatgacacactttgtccattcaatgatg |
19148334 |
T |
|
| Q |
278 |
gaaattctgctttgcttgctttcaaggctttgaaag |
313 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||| |
|
|
| T |
19148333 |
gaaattctgccatgcttgcttttattgctttgaaag |
19148298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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