View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8746_high_5 (Length: 428)
Name: NF8746_high_5
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 50949246 - 50948827
Alignment:
| Q |
1 |
ctggagtgagttgatgtacttcgcacccttatcggtttccctttttaatttgctttgccgacagaattttgttcacattttgttgaagtggaagga---t |
97 |
Q |
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| T |
50949246 |
ctggagtgagttgatgtactttgcacccttatcggtttccctttttaatttgctttgccgacagaattttgttcacattttattgaagtggaaggaggat |
50949147 |
T |
|
| Q |
98 |
gtagttagcttcctacatgtaatactaaatactattttttgcttgtcttttattt-agagatattacccacccacttatgttttcaaatgagggcataaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50949146 |
gtagttagcttcctacatgtaatactaaatactattttttgcttgtcttttattttagagatattacccacccacttatgttttcaaatgagggcataaa |
50949047 |
T |
|
| Q |
197 |
gattcaatgttccnnnnnnnn--gtggacaaataccatgtatcttttgatgcgttgttctccttgtttattgctgaacactgttaatggctagtttgtag |
294 |
Q |
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||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50949046 |
gattcaatgttccttttttttttgtggacaaataccatgtttcttttggtgcgttgttctccttgtttattgctgaacactgttaatggctagtttgtag |
50948947 |
T |
|
| Q |
295 |
catctatcacttaacagtgcaaatatgtagattaatgatacggcagggcctttcaaaagtggaggagtcgcaaactctgttagctgtcctttgttcttat |
394 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50948946 |
catctatcacttaacagtacaaatatgtagattaatgatacggcagggcctttcaaaagtggaggagtcgcaaactctgttagctgtcctttgttcttat |
50948847 |
T |
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| Q |
395 |
cctcactcagtatgtgatgt |
414 |
Q |
| |
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| T |
50948846 |
cctcactcagtatgtgatgt |
50948827 |
T |
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