View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8746_high_6 (Length: 378)
Name: NF8746_high_6
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 14002218 - 14002310
Alignment:
| Q |
173 |
gtgtatcaataccatataaatatattgcgaactttgtttgatatctaatttgtatttgtattttgatgtcaagtttatcatttgatcctataga |
266 |
Q |
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| T |
14002218 |
gtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattttgatgtcaag-ttatcatttgctcatataga |
14002310 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 14002051 - 14002154
Alignment:
| Q |
5 |
tgagatggacatcaacaggaggcagcaaggagggagaagttggctggtggtggttagatcaaacgagagaccgtgagttgcagacgacagtggctagatg |
104 |
Q |
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| T |
14002051 |
tgagttggacagcaacaggaggcagcaaggagggagaagtaggctggcggtggttagatcaaagaagagatcgtgagttgcggacgacggtggctggatg |
14002150 |
T |
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| Q |
105 |
gttt |
108 |
Q |
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|||| |
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| T |
14002151 |
gttt |
14002154 |
T |
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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 14002211 - 14002280
Alignment:
| Q |
288 |
aaaactggtgtgtcaataccgtataactatattgcgaactttgtttgatgtctaatttgtatttatattt |
357 |
Q |
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| T |
14002211 |
aaaactggtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattt |
14002280 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 23885884 - 23885844
Alignment:
| Q |
207 |
tgtttgatatctaatttgtatttgtattttgatgtcaagtt |
247 |
Q |
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| T |
23885884 |
tgtttgatgtctaatttgtgtttgtattttgatgtcaagtt |
23885844 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 56398501 - 56398541
Alignment:
| Q |
207 |
tgtttgatatctaatttgtatttgtattttgatgtcaagtt |
247 |
Q |
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| T |
56398501 |
tgtttgatgtctaatttgtgtttgtattttgatgtcaagtt |
56398541 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 6284612 - 6284572
Alignment:
| Q |
207 |
tgtttgatatctaatttgtatttgtattttgatgtcaagtt |
247 |
Q |
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| T |
6284612 |
tgtttgatgtctaatttgtgtttgtattttgatgtcaagtt |
6284572 |
T |
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