View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8746_high_7 (Length: 362)

Name: NF8746_high_7
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8746_high_7
NF8746_high_7
[»] chr4 (2 HSPs)
chr4 (19-349)||(52794892-52795222)
chr4 (76-168)||(42103715-42103807)
[»] chr5 (1 HSPs)
chr5 (19-349)||(20641987-20642317)
[»] chr6 (3 HSPs)
chr6 (37-338)||(33159723-33160024)
chr6 (224-311)||(31403959-31404046)
chr6 (226-311)||(984074-984159)
[»] chr7 (3 HSPs)
chr7 (84-338)||(3255746-3256001)
chr7 (224-311)||(13713689-13713776)
chr7 (226-311)||(35249802-35249887)
[»] chr2 (3 HSPs)
chr2 (201-321)||(29695643-29695763)
chr2 (247-321)||(1617756-1617830)
chr2 (224-311)||(27691247-27691334)
[»] chr1 (2 HSPs)
chr1 (74-143)||(20777221-20777290)
chr1 (76-168)||(27244151-27244243)
[»] chr8 (2 HSPs)
chr8 (247-321)||(6383922-6383996)
chr8 (226-311)||(2000864-2000949)
[»] chr3 (1 HSPs)
chr3 (247-321)||(42573863-42573937)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 52795222 - 52794892
Alignment:
Q  19 cctttaactcgacgattagtcactggctggatagtgcagctcggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcggtcttctg 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795222 cctttaactcgacgatcagtcactggctggatagtgcagctcggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcggtcttctg 52795123  T
Q  119 cagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgat 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795122 cagaggctgaatatcggtctatggcaaacactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgat 52795023  T
Q  219 cattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795022 cattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaat 52794923  T
Q  319 gaagttctcaaaaataatattcttccggtct 349  Q
    |||||||||||||||||||||||||||||||    
T  52794922 gaagttctcaaaaataatattcttccggtct 52794892  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 42103807 - 42103715
Alignment:
Q  76 tcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatgg 168  Q
    ||||||||||| |||||||| |  || || ||||| ||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||    
T  42103807 tcttggaaaactaagaaacagccaaccgtctctcgttcttctgcagaggctgagtatcgctctatggcgatgactacatgtgagttaaaatgg 42103715  T

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Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 20641987 - 20642317
Alignment:
Q  19 cctttaactcgacgattagtcactggctggatagtgcagctcggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcggtcttctg 118  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20641987 cctttaactcgacgataagtcactggctggatagcgcagctcggtgactctcctatttcttggaaaacaaagaaacaacacactgtatctcggtcttctg 20642086  T
Q  119 cagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20642087 cagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgat 20642186  T
Q  219 cattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20642187 cattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccgaaat 20642286  T
Q  319 gaagttctcaaaaataatattcttccggtct 349  Q
    |||||||||||||||||||||||||| ||||    
T  20642287 gaagttctcaaaaataatattcttccagtct 20642317  T

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Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 37 - 338
Target Start/End: Original strand, 33159723 - 33160024
Alignment:
Q  37 gtcactggctggatagtgcagctcggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggt 136  Q
    |||||||| ||| |||||  ||| ||| | |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||| |||    
T  33159723 gtcactggttggctagtgttgcttggtaaatctcctatttcttggaaaacaaagaaacaacatactgtctctcggtcctctgctgaggcggaatataggt 33159822  T
Q  137 ctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgatcattcactgtgacagtca 236  Q
    | |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||||| |||||||||||| ||||| ||||||||||| |||||    
T  33159823 ccatggcaactactacatgcgagttaaaatggttaaaggggatcctctccaacctaggagttgctcatgataaacccatgattattcactgtgatagtca 33159922  T
Q  237 agcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaagttctcaaaaataat 336  Q
    |||  |  | |||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| |||    
T  33159923 agcaaccttacacattgcgaaaaatcctgtgttccatgaacgtaccaagcacattgaagtggattgtcattttgttcggaacgaagttctcaaaaacaat 33160022  T
Q  337 at 338  Q
    ||    
T  33160023 at 33160024  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 31403959 - 31404046
Alignment:
Q  224 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 311  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| ||||| |||||||||||    
T  31403959 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 31404046  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 984159 - 984074
Alignment:
Q  226 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 311  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| |||| |||||||||||    
T  984159 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 984074  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 338
Target Start/End: Original strand, 3255746 - 3256001
Alignment:
Q  84 aacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctt 183  Q
    ||||||||||||||| |   | ||||| || ||||| || || |||||| ||||||||||||| |||||||| ||||||||||||||| |  |||| ||     
T  3255746 aacaaagaaacaacatatcctctctcgatcctctgctgacgcggaatataggtctatggcaactactacatgagagttaaaatggttacagaggatcctc 3255845  T
Q  184 tccaacctgggagttgttcatgataaaccaatgatcattcactgtgacagtcaag-cggctatccacattgccaaaaatccggtgttccatgaacgtacg 282  Q
    |||||||| ||||||| | |||||||||| ||||  ||||||| ||| ||||| | | |   | ||||||||||||||||  |||||||||||||||||     
T  3255846 tccaacctaggagttgctaatgataaacccatgactattcactatgatagtcatggcagtcttacacattgccaaaaatcttgtgttccatgaacgtacc 3255945  T
Q  283 aagcacattgaagttgactgtcattttgtccggaatgaagttctcaaaaataatat 338  Q
    || ||||||||||| ||| |||||||||| |||||  ||||||||||||| |||||    
T  3255946 aaacacattgaagtagaccgtcattttgttcggaaaaaagttctcaaaaacaatat 3256001  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 13713689 - 13713776
Alignment:
Q  224 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 311  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| ||||| |||||||||||    
T  13713689 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 13713776  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 35249887 - 35249802
Alignment:
Q  226 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 311  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| |||| |||||||||||    
T  35249887 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 35249802  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 29695643 - 29695763
Alignment:
Q  201 tcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgac 300  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||||| ||     
T  29695643 tcatgacaaaccgatgatcattcactatgacagtcaagcggctatacacatcgccaagaacccggtgttccatgaacgcactaaacacattgaagtcgat 29695742  T
Q  301 tgtcattttgtccggaatgaa 321  Q
    |||||||||||||||||||||    
T  29695743 tgtcattttgtccggaatgaa 29695763  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 1617830 - 1617756
Alignment:
Q  247 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaa 321  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||||| ||||||||||| || || ||||||    
T  1617830 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttcgtaatgaa 1617756  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 27691247 - 27691334
Alignment:
Q  224 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 311  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| ||||| |||||||||||    
T  27691247 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 27691334  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 20777221 - 20777290
Alignment:
Q  74 tttcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggc 143  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| ||||| |||||||| ||||||||    
T  20777221 tttcttggaaaactaagaaacaaccaactgtttctcggtcttctgctgaggccgaatatcgctctatggc 20777290  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 27244243 - 27244151
Alignment:
Q  76 tcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatgg 168  Q
    ||||||||||| |||||||| |  || || ||||| ||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||    
T  27244243 tcttggaaaactaagaaacagccaaccgtctctcgttcttctgcagaggctgagtatcgctctatggcgatgactacatgtgagttaaaatgg 27244151  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 6383922 - 6383996
Alignment:
Q  247 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaa 321  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||||| ||||||||||| || || ||||||    
T  6383922 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttcgtaatgaa 6383996  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 2000864 - 2000949
Alignment:
Q  226 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgt 311  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| |||| |||||||||||    
T  2000864 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 2000949  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 42573863 - 42573937
Alignment:
Q  247 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaa 321  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||| | ||||||||||| || || ||||||    
T  42573863 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaattggactgtcatttcgttcgtaatgaa 42573937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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