View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8746_high_9 (Length: 274)
Name: NF8746_high_9
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 43132303 - 43132572
Alignment:
| Q |
1 |
catgctcctgggtttccatcagatcttgatgattctggttatgtctacaatatattggatttgcaggtaattttttgcttagtaacatgatcatcaattc |
100 |
Q |
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| T |
43132303 |
catgctcctgagtttccatcagatcttgatgattctggttatgtctacaatatattggatttgcaggtaattttttgcttagtaacatgatcatcaattc |
43132402 |
T |
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| Q |
101 |
aagttagtatctatcgcgtttatagtaacatcgatattatactgttttaggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132403 |
aagttagtatctatcgcgtttatagtaacatccatattatactgttttaggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatca |
43132502 |
T |
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| Q |
201 |
tcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtacccactaacttagtattatctacc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
43132503 |
tcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtatccactaacttagtaatatttacc |
43132572 |
T |
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