View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8746_low_1 (Length: 652)
Name: NF8746_low_1
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 639
Target Start/End: Complemental strand, 26560931 - 26560311
Alignment:
| Q |
11 |
catcatctattcctcaatattgattttaagttcaatagcagggttgaagagatggcgtgcattgttatggagaaaaatggaggtcctccagatattatag |
110 |
Q |
| |
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|||||||||||||||||||||||| ||| || ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
26560931 |
catcatctattcctcaatattgatgttaggtgcaataacagagttgaagagatggcgtgcatttttatggagaaaaatggaggtccttcagatattatag |
26560832 |
T |
|
| Q |
111 |
tgaacgacgctggagtcattaacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaacttgaaaggtaatgtcaa |
210 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
26560831 |
tgaacggcgccggagtcgttaacaagaacaacaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaa |
26560732 |
T |
|
| Q |
211 |
tgtgttgaggcacttcattcctttgatggttaaaaagaacaagaatgaagagggagggataatagtgaatatgtcttcaggttggggaagatcaggtgct |
310 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
26560731 |
tgtgttgaggcccttcatacctttgatggttaaaaataaaaagtatgaagagggagggataatagtgaacatgtcttcaggttggggaagatcagttgct |
26560632 |
T |
|
| Q |
311 |
gccctcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggcagtggtggcactca |
410 |
Q |
| |
|
|| || ||||||||||||| || ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
26560631 |
gcacttgtagcaccttactgtgtatccaaatgggcaattgaaggacttaccaagtctgttgttgaagagttgcctaaagtaatggcagtggtggcactca |
26560532 |
T |
|
| Q |
411 |
atacaggagtcatcaacactgacatgcttgcgtcttgctgcagtgcttcctcatctctctatcaatccccagaatcatgggttttggaggcagccactaa |
510 |
Q |
| |
|
|| |||| |||||||||||| |||||||||| | ||||| |||||||||||||||| |||| || |||||||||||||||||||||||||||||| || |
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|
| T |
26560531 |
atccaggggtcatcaacactaacatgcttgctttttgctatggtgcttcctcatctctttatcgattcccagaatcatgggttttggaggcagccaccaa |
26560432 |
T |
|
| Q |
511 |
aatactcaatcttacacccacaaacaatggtgctnnnnnnnnnnnnnnnnnatttgaagtcactcacctaatctcctagttagatatctagctacatgat |
610 |
Q |
| |
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||||||||||||||||| ||| | |||||| || |||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
26560431 |
gatactcaatcttacaccaacagataatggttct--------tctctctctatttgaagtcactcacctaatctcctagctagatatctacttacatgat |
26560340 |
T |
|
| Q |
611 |
tgattatcaactttatttgtattagtatt |
639 |
Q |
| |
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|||||||| |||| ||||||||||||||| |
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| T |
26560339 |
tgattatcgacttgatttgtattagtatt |
26560311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 53 - 544
Target Start/End: Complemental strand, 24890348 - 24889857
Alignment:
| Q |
53 |
gttgaagagatggcgtgcattgttatggagaaaaatggaggtcctccagatattatagtgaacgacgctggagtcattaacaagaacaacaagatgtggg |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |
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|
| T |
24890348 |
gttgaagagatggcacacattgttatggagaaaaaaggaggtcctccagatattatagtgaacggcgctggcgtcattaacaagaacagtaagatgtggg |
24890249 |
T |
|
| Q |
153 |
aggttttgtctgaagagtttgatttggtgatggataccaacttgaaaggtaatgtcaatgtgttgaggcacttcattcctttgatggttaaaaagaacaa |
252 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||| | |||||||| |
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|
| T |
24890248 |
aggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatgtgttgaggcacttcattcctctaatgatcgccaagaacaa |
24890149 |
T |
|
| Q |
253 |
gaatgaagagggagggataatagtgaatatgtcttcaggttggggaagatcaggtgctgccctcgtagcaccttactttgcatccaaatgggaaattgaa |
352 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||||||||| | |||||||||||||| ||||||| |
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|
| T |
24890148 |
gaatgaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattgtgcatccaaatgggcaattgaa |
24890049 |
T |
|
| Q |
353 |
ggactcaccaagtctgttgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcaacactgacatgcttgcgtcttgctgca |
452 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || |||| |
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| T |
24890048 |
ggactcactaagtctgttgctgaagagttgcctaaaggaatggcagtagtggcactgaatccaggagtcatcaacactgacatgcttgcttcatgctatg |
24889949 |
T |
|
| Q |
453 |
gtgcttcctcatctctctatcaatccccagaatcatgggttttggaggcagccactaaaatactcaatcttacacccacaaacaatggtgct |
544 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||||||||||| |
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|
| T |
24889948 |
gtgcttcctcatcgctttatcaatccccagaatcatgggcttcagaggcagccaccaagatactcaatcttacacctgcagacaatggtgct |
24889857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 26562666 - 26562944
Alignment:
| Q |
1 |
ccaacaacaacatcatctattcctcaatattgattttaagttcaatagcagggttgaa--------gagatggcgtgcattgttatggagaaaaatggag |
92 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26562666 |
ccaacaacaacat-atttattcctcaatattgattttaagttcaagaacagggttgaagagatgaagagatggcgtgcattgttatggagaaaaatggag |
26562764 |
T |
|
| Q |
93 |
gtcctccagatattatagtgaacgacgctggagtcattaacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaa |
192 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26562765 |
gtcctccaaatattatagtgaacgacgctggagtcattaacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaa |
26562864 |
T |
|
| Q |
193 |
cttgaaaggtaatgtcaatgtgttgaggcacttcattcctttgatggttaaaaagaacaagaatgaagagggagggataa |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26562865 |
cttgaaaggtaatgtcaatgtgttgaggcacttcatttctttgatggttaaaaagaacaagaatgaagagggagggataa |
26562944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 298 - 610
Target Start/End: Original strand, 26562943 - 26563247
Alignment:
| Q |
298 |
aagatcaggtgctgccctcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
397 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26562943 |
aagatcaggtgctgcactcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
26563042 |
T |
|
| Q |
398 |
gtggtggcactcaatacaggagtcatcaacactgacatgcttgcgtcttgctgcagtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
497 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26563043 |
gtgatggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
26563142 |
T |
|
| Q |
498 |
aggcagccactaaaatactcaatcttacacccacaaacaatggtgctnnnnnnnnnnnnnnnnnatttgaagtcactcacctaatctcctagttagatat |
597 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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|
| T |
26563143 |
aggaagccaccaaaatactcaatcttacacccacaaacaatggtgct--------tctctctctatttgaagtcactcacctaatctcctagttagaaat |
26563234 |
T |
|
| Q |
598 |
ctagctacatgat |
610 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26563235 |
ctagctacatgat |
26563247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 131 - 490
Target Start/End: Original strand, 56436799 - 56437152
Alignment:
| Q |
131 |
aacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaacttgaaaggtaatgtcaatgtgttgaggcacttcattc |
230 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||| | || |||||||||||| || ||||| | |
|
|
| T |
56436799 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcatcc |
56436898 |
T |
|
| Q |
231 |
ctttgatggttaaaaagaacaagaatgaagagggagggataatagtgaatatgtcttcaggttggggaagatcaggtgctgccctcgtagcaccttactt |
330 |
Q |
| |
|
|| | ||| | || || | | || ||| ||| || ||||| || ||||||| |||||||||||||| ||||| || || || || ||||||| |
|
|
| T |
56436899 |
ctctcatgatcaacaat-----ggaggaggaga-aggtattatagttaacttgtcttctggttggggaagatcgggtgcagcacttgttgctccttactg |
56436992 |
T |
|
| Q |
331 |
tgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcaacact |
430 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||| ||||||| || |||||||||| || || ||||||||| | || |||||||||||| |
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|
| T |
56436993 |
tgcatccaaatgggctattgaaggactcacaaagtctgtagctaaagagttaccacaaggaatggctgttgtcgcactcaatcctggtgtcatcaacact |
56437092 |
T |
|
| Q |
431 |
gacatgcttgcgtcttgctgcagtgcttcctcatctctctatcaatccccagaatcatgg |
490 |
Q |
| |
|
||||||||||| ||||||| |||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
56437093 |
gacatgcttgcttcttgctttggtgcttccgcttctctttatcaatcccctgaatcatgg |
56437152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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