View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8746_low_10 (Length: 280)
Name: NF8746_low_10
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 43131876 - 43132133
Alignment:
| Q |
4 |
atttttatgaaataatctaagattgatgtgtaatg-aaatcagaattgaatttcaaatacatgatttcaaggttcctgtgattgtcatgcaaagaccaca |
102 |
Q |
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| T |
43131876 |
atttttatgaaataatctaagattgatgtgtaatggaaatcagaattgaatttcaaatacatgatttcaaggttcctgtgattgtcatgcaaagaccaca |
43131975 |
T |
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| Q |
103 |
acctcagccgccacaagcattgatgcaaaacagatatgttgaaacagttattcatgaaaagttgaaaagtgtaaggatcacatgaattcatggaggcacc |
202 |
Q |
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| T |
43131976 |
accacagccgccacaagcattgatgcaaaacagatatgttgaaacagttattcatgaaaagttgaaaagtgtaaggatcacatggattcatggaggcacc |
43132075 |
T |
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| Q |
203 |
aatgtttctattgcaggatcatggaacaactgggagacagtgtaaataacaaatagtt |
260 |
Q |
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| T |
43132076 |
aatgtttctattgcaggatcatggaacaactgggagacagtgtaaataacaaatagtt |
43132133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 43134718 - 43134819
Alignment:
| Q |
134 |
agatatgttgaaacagttattcatgaaaagttgaaaagtgtaaggatcacatgaattcatggaggcaccaatg--tttctattgcaggatcatggaacaa |
231 |
Q |
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| T |
43134718 |
agatatttagaaacaatgattcatgaaaggttgaaaagtgaaaggatcgcatagattcatggaggcaccaatgtctctctattgcaggatcatggaacaa |
43134817 |
T |
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| Q |
232 |
ct |
233 |
Q |
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| T |
43134818 |
ct |
43134819 |
T |
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