View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8746_low_3 (Length: 463)
Name: NF8746_low_3
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 44880324 - 44880771
Alignment:
| Q |
1 |
catgatcccaactaataaaccattatattacctaatactttacattgagcttaatcttgttacatgtaaacctttaaatttaaaacaaagaacaccagcc |
100 |
Q |
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| T |
44880324 |
catgatcccaactaataaaccattatattacctaatactttccattgagcttaatcttgttacatgtaagcctttaaatttaaaacaaagaacaccagcc |
44880423 |
T |
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| Q |
101 |
tgtcaaaacatagaacttcgacaactagtactcccccttggttttcttggtacgatcccaaaacatggtatggagtcctcaataaattaaatggggttcc |
200 |
Q |
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| T |
44880424 |
tgtcaaaacatagaacttcgacaactagtactcccccttggttttcttggtacgatcccaaaacatggtatggagtcctcaataaattaaatggggttcc |
44880523 |
T |
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| Q |
201 |
ttttctagtgtcctaactcttcaattcacaaaaattaatagaaaagaagcaagtctagataggacaatgatctttacataaaccatataaaatcacttcc |
300 |
Q |
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| T |
44880524 |
ttttctagtgtcctaactcttcaattcacaaaaattaatagaaaagaagcaagtctagataggacaatgatctttacataaaccatataaaatcacttcc |
44880623 |
T |
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| Q |
301 |
gaaatttcaaacacaaccttgtagatagactgtcaactggaacatcatttccagtttgccat--ccaaatgttacaaaacactacgaactctaatggttg |
398 |
Q |
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| T |
44880624 |
aaaatttcaaacacaaccttgtagatagactgtcaactggaacatcatttccagtttgccattgccaaatgttacaaaacactacgaactctaatggttg |
44880723 |
T |
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| Q |
399 |
tttgaggtccatgttattccacccacgtccatccgcgttttaggtatg |
446 |
Q |
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| T |
44880724 |
tttgaggtccatgttattccacccacgtccatccgcgttttaggtatg |
44880771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 44862537 - 44862665
Alignment:
| Q |
9 |
caactaataaaccattatattacctaatactttacattgagcttaatcttgttacatgtaaacctttaaatttaaaacaaagaacaccagcctgtcaaaa |
108 |
Q |
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| T |
44862537 |
caactaataaacc-ttatattgaccaatactttccattgagcttaaacttgttacaagtaaacctttaaatttaaagcaaagaacaccgacctgtcaaaa |
44862635 |
T |
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| Q |
109 |
catagaacttcgacaactagtactccccct |
138 |
Q |
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| T |
44862636 |
catagaactttgacaactagcactccccct |
44862665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 44837430 - 44837496
Alignment:
| Q |
68 |
aaacctttaaatttaaaacaaagaacaccagcctgtcaaaacatagaacttcgacaactagtactcc |
134 |
Q |
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| T |
44837430 |
aaacctataaataaaaaaccaagagcaccggcctttcaaaacatagaacttcggcaactagtactcc |
44837496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 44862693 - 44862769
Alignment:
| Q |
150 |
gtacgatcccaaaacatggtatggagtcctcaataaattaaat-ggggttccttttctagtgtcctaactcttcaat |
225 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| |||| | |||| || |||||||| ||||||||| |
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| T |
44862693 |
gtacgatttcaaaacatggtacaaagtcctcaataaattaaatggggggttctttccttgtgtcctatctcttcaat |
44862769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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