View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8746_low_9 (Length: 288)
Name: NF8746_low_9
Description: NF8746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8746_low_9 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 46128616 - 46128888
Alignment:
| Q |
16 |
catgattagtgttagaaattaattattgtggtttgggagatatgcatttaaaattagttttaggagagaattactatggtagtgtagtgtgagtagttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128616 |
catgattagtgttagaaattaattattgtggtttgggagatatgcatttaaaattagttttaggagagaattactatggtagtgtagtgtgagtagttcc |
46128715 |
T |
|
| Q |
116 |
tgaagtagttaccatttagtcaatagctacttaattgatgcttttactcataatctagaccttgggcttaagtaatgtttagggaattttaccttcaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128716 |
tgaagtagttaccatttagtcaatagctacttaattgatgcttttactcataatctagaccttgggcttaagtaatgtttagggaattttaccttcaatt |
46128815 |
T |
|
| Q |
216 |
aattacgagtaagaaaactctcatgttatgctaatttaactttgattactttcttttaaccaataattgggaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128816 |
aattacgagtaagaaaactctcatgttatgctaatttaactttgattactttcttttaaccaataattgggaa |
46128888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 38655180 - 38655119
Alignment:
| Q |
227 |
agaaaactctcatgttatgctaatttaactttgattactttcttttaaccaataattgggaa |
288 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
38655180 |
agaaaagtcttatgttatgctaatttaactttgattagttgcttttaaccaataattgggaa |
38655119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University