View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_high_15 (Length: 223)
Name: NF8747_high_15
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_high_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45546164 - 45546387
Alignment:
| Q |
1 |
tagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtgaaagctttgcttattattgtataacactgatgcaaaa-aaggctcata |
99 |
Q |
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| T |
45546164 |
tagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtgaaagctttgcttattattgtataacactgatgtaaaaaaaggctcata |
45546263 |
T |
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| Q |
100 |
tatctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctgaagctcagaagct |
199 |
Q |
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| T |
45546264 |
tatctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctgaagctcagaagct |
45546363 |
T |
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| Q |
200 |
cagatgctggtataccaatgtctc |
223 |
Q |
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| T |
45546364 |
cagatgctggtataccaatgtctc |
45546387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45550736 - 45550937
Alignment:
| Q |
1 |
tagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtgaaagctttgcttattattgtataacactgatgcaaaaaaggctcatat |
100 |
Q |
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| T |
45550736 |
tagttgcaatcaaatctgtcaaggtttgggactttggaggtattgcaaagtgaaagttttgccgattattgtctagcactgattcaaacaaggctcat-t |
45550834 |
T |
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| Q |
101 |
atctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctgaagctcagaagctc |
200 |
Q |
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| T |
45550835 |
atctcactgttgaatgtcttctgtttcaggtgtttctctgtcagctatgcacagaagtttagttatgatcaatccagatgtacccgaggctcggaagctc |
45550934 |
T |
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| Q |
201 |
aga |
203 |
Q |
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| T |
45550935 |
aga |
45550937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 42780854 - 42780924
Alignment:
| Q |
135 |
tctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctgaagctcagaagctcagatg |
205 |
Q |
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| T |
42780854 |
tctttgtcaactatatgcagaagtttagttctgatcaatccagtagtacctgaatgttagaagctaagatg |
42780924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 36871739 - 36871695
Alignment:
| Q |
8 |
aatcaaatccctcaaggttggggattttcaaggtattgcaatgtg |
52 |
Q |
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| T |
36871739 |
aatcaaatacctcaaggttggggactttcaaggtattgcaatgtg |
36871695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 36871148 - 36871054
Alignment:
| Q |
101 |
atctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataag----cagaagtttagttctggtcaatccagaagtacctgaagct |
191 |
Q |
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||||||||| ||||| | |||| | |||||| |||||||| ||||||| | || ||||||||||| | ||||||||||||||||||||||| |
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| T |
36871148 |
atctcattgttgaatatgttctttttcaggtgtttctttgacagctattaattaacacaagtttagttccgatcaatccagaagtacctgaagct |
36871054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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