View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_high_16 (Length: 219)
Name: NF8747_high_16
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 45546547 - 45546365
Alignment:
| Q |
19 |
agtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattgcagcatctttaccttcagaatcatacctgcaacccaa |
118 |
Q |
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| T |
45546547 |
agtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattgcagcatccttaccttcagaatcatacctgcaacccaa |
45546448 |
T |
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| Q |
119 |
gtaataaacatataaatatgattatcatagacttaacttaaaaagggaacaataacctaggagacattggtataccagcatct |
201 |
Q |
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| T |
45546447 |
gtaataaacatataaatatgattatcatagacttaacttaaaaagggaacaataacctaggagacattggtataccagcatct |
45546365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 45551118 - 45550947
Alignment:
| Q |
26 |
tgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattgcagcatctttaccttcagaatcatacctgcaacccaagtaataa |
125 |
Q |
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| T |
45551118 |
tgatctaattccgctgttagatgatggaattgatccagaccttaaagcaaccattgcagcatccttaccttcagaatcatacctgcagcccaaataataa |
45551019 |
T |
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| Q |
126 |
acatataaatatgattatcatagacttaacttaaaaagggaacaataacctaggagacattggtataccagc |
197 |
Q |
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| T |
45551018 |
acatataaatatgattaacataaacatatcataacaaggaaacaataacctaggggacaatggtataccagc |
45550947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 50134777 - 50134903
Alignment:
| Q |
19 |
agtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattgcagcatctttaccttcagaatcatacctgcaacccaa |
118 |
Q |
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|||| |||||| | |||||| ||| ||||||| |||||||| |||||||| || | ||||| |||||| |||||||||||||||||||| || |||| |
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| T |
50134777 |
agtacactgatttgcttccattgtcggatgatggaattgaactagagcttaaagtggacattgaagcatcattaccttcagaatcatacctacataccaa |
50134876 |
T |
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| Q |
119 |
gtaataaacatataaatatgattatcata |
147 |
Q |
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||| || ||||||||||||||| |||| |
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| T |
50134877 |
ataacaa--atataaatatgattaacata |
50134903 |
T |
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