View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_high_4 (Length: 335)
Name: NF8747_high_4
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_high_4 |
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| [»] scaffold1861 (1 HSPs) |
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Alignment Details
Target: scaffold1861 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold1861
Description:
Target: scaffold1861; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 35 - 317
Alignment:
| Q |
6 |
gagttcaagtaaaattaacaaaaaatgtgatttagcaacttttagtacaggttgccagtcaaggaattaaaataagtggatgatgtgtctaataatcatt |
105 |
Q |
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| T |
35 |
gagttcaagtaaaattaacaaaaaatgtgatttagcaacttttagtatcggttgccactcaaggaattaaaataagtggatgatgtatctaataatcatt |
134 |
T |
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| Q |
106 |
ggagtgtgttgaaagagagtgttaaaatgagcgactctaacatttctctattgcgatttatacaattattctttcaagttatgtacttgtgttatgatca |
205 |
Q |
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| T |
135 |
ggagtgtgttgaaagaaagtgttaaaatgagtgattctaacatttctctactgtgctttatacaattattctttcaagggatgtacttgtgttatgatca |
234 |
T |
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| Q |
206 |
tggcgaacgcgtagtgaggtttttatttcactttaattacctaacatccagttatagacaacattatgtttattatatatgtg |
288 |
Q |
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| T |
235 |
tggcgaacacctagtgaggttttcttttcactttaattacctaacatccagttatagacaacattatgtttattatatatgtg |
317 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 37085406 - 37085339
Alignment:
| Q |
25 |
aaaaaatgtgatttagcaacttttagtacaggttgccagtcaaggaattaaaataagtggatgatgtg |
92 |
Q |
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| T |
37085406 |
aaaaaatgtcatttagcaacctctagtaccggttaccagtcaaggaattaaaataagcgggtgatgtg |
37085339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 49977673 - 49977732
Alignment:
| Q |
63 |
gtcaaggaattaaaataagtggatgatgtgtctaataatcattggagtgtgttgaaagag |
122 |
Q |
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| T |
49977673 |
gtcaaggaattaaaataagtgggtgatgtggctaattgtcatttgagtgtgttaaaagag |
49977732 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 30249397 - 30249455
Alignment:
| Q |
76 |
aataagtggatgatgtgtctaataatcattggagtgtgttgaaagagagtgttaaaatg |
134 |
Q |
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| T |
30249397 |
aataaggggatgatgtgtctaattattattggagtgtgttaaaagaaagtgttaaaatg |
30249455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 39217688 - 39217636
Alignment:
| Q |
63 |
gtcaaggaattaaaataagtggatgatgtgtctaataatcattggagtgtgtt |
115 |
Q |
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| T |
39217688 |
gtcaaggaattaaaataagtgggtgatgtggctaattatcatttgaatgtgtt |
39217636 |
T |
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