View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_high_5 (Length: 318)
Name: NF8747_high_5
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 16862034 - 16861865
Alignment:
| Q |
131 |
caaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactcacttggcgtctcaccacttccttttttgacgtc |
230 |
Q |
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| T |
16862034 |
caaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactcacttggcgtctcaccacttccttttttgacgtc |
16861935 |
T |
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| Q |
231 |
tgtcttgtttttcctgcttgagaagcagctatggtggccgcaacaatgttatttgattggttgtcattag |
300 |
Q |
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| T |
16861934 |
tgtcttgttgttcctgcttgagaagcagctatggtggccgcaacaatgttatttgattggttgtcattag |
16861865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 16865366 - 16865243
Alignment:
| Q |
12 |
ggtttctcagaactaacagaaaattcatcaccaggtgtatactctttgaagcacgctaacctcccaagttcttcaacttcatcaattattaagtcaagtt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16865366 |
ggtttctcagaactaacagaaaattcatcaccaggtatatactctttgaagcacgctaacctcccaagttcttcaacttcatcaattattaagtcgagtt |
16865267 |
T |
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| Q |
112 |
tcgccaccgtttccaaaagcaaag |
135 |
Q |
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| T |
16865266 |
tcatcaccgtttccaaaagcaaag |
16865243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 40636130 - 40635933
Alignment:
| Q |
1 |
catcaactcatggtttctcagaactaacagaaaattcatcaccaggtgtatactctttgaagcacgctaacctcccaagttcttcaacttcatcaattat |
100 |
Q |
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| T |
40636130 |
catcaactcttggtttctcacaactaatagaaaactcatcgccaggtgtatactctttgaaacacgccaatctcccaagttcttcaacttcatcaattat |
40636031 |
T |
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| Q |
101 |
taagtcaagtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactca |
198 |
Q |
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| T |
40636030 |
caaatccagttttgccaccgtttccacgagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagcaattttactca |
40635933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 40648093 - 40647896
Alignment:
| Q |
1 |
catcaactcatggtttctcagaactaacagaaaattcatcaccaggtgtatactctttgaagcacgctaacctcccaagttcttcaacttcatcaattat |
100 |
Q |
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| T |
40648093 |
catcaactcttggtttctcacatctaacagaaaattcatcaccatgtctatactctttgaaacatgccaaccgaccaagttcttcaacttcatcaattat |
40647994 |
T |
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| Q |
101 |
taagtcaagtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactca |
198 |
Q |
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| T |
40647993 |
taagtccagtttcgccacggtttccacaagcaatgaaacaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactca |
40647896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 4780048 - 4780194
Alignment:
| Q |
52 |
actctttgaagcacgctaacctcccaagttcttcaacttcatcaattattaagtcaagtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaa |
151 |
Q |
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||||||| ||||| |||| |||||||||||||||||||| ||||| | | || | ||| || || ||||||| ||||||||| |||||||||||||| |
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| T |
4780048 |
actctttaaagcaatctaatctcccaagttcttcaacttcctcaataacaagatccaattttgcaactgtttccacaagcaaagatgcaaaagcagcaaa |
4780147 |
T |
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| Q |
152 |
aggcaatgcttcagaaaactcaagactagtgatagccattttactca |
198 |
Q |
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| T |
4780148 |
aggaagtgcctcagagaattcaagactagtgatagcaattttactca |
4780194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 51862940 - 51862864
Alignment:
| Q |
108 |
agtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgat |
184 |
Q |
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| T |
51862940 |
agttttgccaccatttccacaagcaaagaagtgaaagcagcaaaaggtagtgcttctgagaactcaaggctagtgat |
51862864 |
T |
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