View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_high_6 (Length: 314)
Name: NF8747_high_6
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 54037062 - 54036920
Alignment:
| Q |
1 |
aactttttgttgttcttcttcatggtttttgttattttgctcaaactcatgtccacatttggcagtagcatggccatcctaacagtaaacacagagagag |
100 |
Q |
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| T |
54037062 |
aactttttgttgttcttcttcatggtttttgttattttgctcaaactcatgtccacatttggcagtagcatggccatcctaacagtaaacagagagagag |
54036963 |
T |
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| Q |
101 |
agcaatcaattaacatttttcttaagaagtaaattttattaat |
143 |
Q |
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| T |
54036962 |
agcaatcaattaacatttttcttaagaagtaaattttattaat |
54036920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 54036879 - 54036768
Alignment:
| Q |
186 |
tagagtccaatcagttaaaatgaaataggagggaccaacactacttacctcaaagttataaatatcaatcaaacaatacaacctcagcctgagcaacata |
285 |
Q |
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| T |
54036879 |
tagagtccaatcagttaaaatgaaacaggagggaccaacactacttgcctcaaagttataaatatcaatcaaacaatacaagctcagcctgagcaacata |
54036780 |
T |
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| Q |
286 |
caagacgattag |
297 |
Q |
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| T |
54036779 |
caagacgattag |
54036768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 1080272 - 1080384
Alignment:
| Q |
5 |
ttttgttgttcttcttcatggtttttgttattttgctcaaactcatgtccacatttggcagtagcatggccatcctaacagtaaacacagagagagagca |
104 |
Q |
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| T |
1080272 |
ttttgttgttcttcttcttggttcttgttattttgctcaatcgcatgtccactcaaggcagtaatgtggccatcataacagta---acagagagagagca |
1080368 |
T |
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| Q |
105 |
atcaattaacattttt |
120 |
Q |
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| T |
1080369 |
gtcaattaacattttt |
1080384 |
T |
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