View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_high_7 (Length: 285)
Name: NF8747_high_7
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 4722145 - 4722334
Alignment:
| Q |
76 |
ccaaaatatgataataacttcattgtggattattcgactaggttcaatgaattgcttaagacatagtccatatagacgttccatattacggatcaatgaa |
175 |
Q |
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| T |
4722145 |
ccaaaatatgataataacttcattgtagattattcgacgaggttcaatgaattgcttaagacatagtccatatagacgttccatattacggatcaatgaa |
4722244 |
T |
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| Q |
176 |
tttcttggacttccaagaccaagacaatggatagttacttcattgttaattggttcaatgtaagtagaaacagaatattgcaaagcaaaaca |
267 |
Q |
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| T |
4722245 |
tttcttggacttccaagaccaagacaatggatagttacttcattgttaattggttcaatgt--gtagaaacagaatattgcaaagcaaaaca |
4722334 |
T |
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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4721117 - 4721196
Alignment:
| Q |
1 |
atttcactatgtatggtccatgggactggaaaattgaagtgcttccgaacaagttcatcgtctatatggaggctaccaaa |
80 |
Q |
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| T |
4721117 |
atttcactatgtatggtccatgggactggaaaactgaagtgcttccgaacaagttcatcgtctttatggaggctaccaaa |
4721196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4741945 - 4742024
Alignment:
| Q |
1 |
atttcactatgtatggtccatgggactggaaaattgaagtgcttccgaacaagttcatcgtctatatggaggctaccaaa |
80 |
Q |
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| T |
4741945 |
attttactatctatggtccatgggattggaaaactgaagtgcttccgaacaagttcatcgtctgtatggaggctaccaaa |
4742024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 4741555 - 4741672
Alignment:
| Q |
148 |
tagacgttccatattacggatcaatgaatttcttggacttccaagaccaagacaatggatagttacttcattgt---taattggttcaatgtaagtagaa |
244 |
Q |
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| T |
4741555 |
tagacattccatattacggatcaatgaattccatggacttccaa------gacaatggatagttacttcattgttgattattggttc-atgtaagtggaa |
4741647 |
T |
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| Q |
245 |
acaga--atattgcaaagcaaaaca |
267 |
Q |
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| T |
4741648 |
acagaatatattgcaaagcaaaaca |
4741672 |
T |
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