View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_low_1 (Length: 688)
Name: NF8747_low_1
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 25 - 682
Target Start/End: Original strand, 39535438 - 39536094
Alignment:
| Q |
25 |
tctcacaacattatgggaatctagtttgtcattatcagtttcaaaaatctcactccaatctagtttgttcaatagaac----tattcttcctcgcttctt |
120 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39535438 |
tctcactacattatgggaatctagtttgtcattatcagtttcaaaaatctcactccaatctagtttgttcaatagaacgaactattcttcctcgcttctt |
39535537 |
T |
|
| Q |
121 |
ccaaagatttcctaacctcacttccctccacgtcactggcctatgcggagacactcacgtccaagcgctttttacccacccctccacttcctctgcagac |
220 |
Q |
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| T |
39535538 |
ccaaagatttcttaacctcacttccctccacgtcactggcctatgcggagacactcacgtccaagcgctttttacccacccctccacttcctctgcagac |
39535637 |
T |
|
| Q |
221 |
atcaccttggaatgtagcgcataccagcagacacagaatggtggtactggtagtaggattggaactatttacattttctttttaggctatggataattat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39535638 |
atcaccttggaatgtagcgcataccagcagacacagaatggtggtactggtagtaggattggaactatttacattttctttttaggctatggataattat |
39535737 |
T |
|
| Q |
321 |
gaattaatgatgatgatatagttggagttttatttgattctcattttggttgcacgtgcaaacacatgatgtattgagttagatagatattatttatcca |
420 |
Q |
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| T |
39535738 |
gaattaatgatgatgatatagttggagttttattttattctcattttggtttcacgtgcaaacacatgatgtattgagt----tagatattatttatcca |
39535833 |
T |
|
| Q |
421 |
actttgagnnnnnnnccccatttatttgccgcattattttgttcaacgaatagaatgttattactgggactgaattatgtcattgtttcaaattattatg |
520 |
Q |
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| T |
39535834 |
actttgagttttttt-cccttttatttgccgcattattttgttcaacccatagaatgttattactgggactgaattatgtcattgtttcaaattattatg |
39535932 |
T |
|
| Q |
521 |
tgttggtggccgtggttggtgtcagtatttgtgtccatgcttcacaggttatagatgaatgcatggaggagacatataccttagatgatgacgaaactgc |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39535933 |
tgttggtggccgtggttggtgtcagtatttgtgtccatgcttcacaggttatagatgaatgcatggaggagacatataccttagatgatgacgaaactgc |
39536032 |
T |
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| Q |
621 |
atatagttttataggtttgtttatagtttcactaaattattattatgcaagtgatgtccatc |
682 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
39536033 |
atatagttttataggtttgtttatagtttcactaaattattattatgcaagtcatgttcatc |
39536094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 39519897 - 39519745
Alignment:
| Q |
94 |
caatagaactattcttcctcgcttcttccaaagatttcctaacctcacttccctccacgtcactggcctatgcggagacactcacgtccaagcgcttttt |
193 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||| |
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| T |
39519897 |
caatcgaactattcttcctcgcttcttccaaagatttcctaacctcacttccctccatgttactggcttatgcggagacactcacgttcaagcgcttttt |
39519798 |
T |
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| Q |
194 |
acccacccctccacttcctctgcagacatcaccttggaatgtagcgcatacca |
246 |
Q |
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| T |
39519797 |
gcccacccctccacttcctctatagacatcaccttggaatgtagcgcatacca |
39519745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 523
Target Start/End: Complemental strand, 24894520 - 24894488
Alignment:
| Q |
491 |
tgaattatgtcattgtttcaaattattatgtgt |
523 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
24894520 |
tgaattatgtcattttttcaaattattatgtgt |
24894488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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