View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_low_13 (Length: 251)
Name: NF8747_low_13
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_low_13 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 4741707 - 4741944
Alignment:
| Q |
15 |
agacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtgatcatcaaaactatttct---aggtaacttaatacccaattaaactaacaa |
111 |
Q |
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| T |
4741707 |
agacctcaaaaacttgttgaagtagaaagttagaaactgttcatttgtcatcatcaaaactatatttttaaggtaatt--attcccaattaaaccaacaa |
4741804 |
T |
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| Q |
112 |
attattgggaaacttgtcacatcatcaaaagacttattttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaattcaa |
211 |
Q |
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| T |
4741805 |
atcagtgggaaacttgtcacatcattaaaagacttcttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaattcaa |
4741904 |
T |
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| Q |
212 |
aataaggaaaattcaaatgtttacatcactttcactttca |
251 |
Q |
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| T |
4741905 |
aattaggaaaattcaaatgtttacatcactttcactttca |
4741944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 4721031 - 4721116
Alignment:
| Q |
166 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttca |
251 |
Q |
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| T |
4721031 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttca |
4721116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4742782 - 4742854
Alignment:
| Q |
15 |
agacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtg--atcatcaaaactatttctaggt |
85 |
Q |
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| T |
4742782 |
agacctcaagaacatgttgaagtataaagttagaaattattcagttgtgtcatcatcaaaactatttccaggt |
4742854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 4726160 - 4726262
Alignment:
| Q |
148 |
ttttgtttgtt-aatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcac |
246 |
Q |
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| T |
4726160 |
ttttgtttgtttaatatgc-gagtttagtaaatcgatttgctgtctcattcggtttggaatt-gaaattggaaaaattcagatgtttacaacagtttcac |
4726257 |
T |
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| Q |
247 |
tttca |
251 |
Q |
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||||| |
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| T |
4726258 |
tttca |
4726262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 4722380 - 4722450
Alignment:
| Q |
57 |
atttgtgatcatcaaaactatttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgt |
128 |
Q |
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| T |
4722380 |
atttgtcatcattaaaactatttccaggtaact-actactcaattaaaccaacaaattagtgggaaacttgt |
4722450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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