View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_low_16 (Length: 228)
Name: NF8747_low_16
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 4189353 - 4189557
Alignment:
| Q |
1 |
attcacaaatagctggaccgagatcatatccacgattttcccaagcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaa |
100 |
Q |
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| T |
4189353 |
attcacaaatagctggaccgagatcatatccacgattttcccaagcgaaaaaggaaacgaacatagcttaaatattttacactttgaaccaaaacttgaa |
4189452 |
T |
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| Q |
101 |
gactccgttcgtgccacattcaatctcacgcgtgaagatttgaacgagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcat |
200 |
Q |
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| T |
4189453 |
gactccgttcgtgccacattcaatctcacgcgtgaagatttgaacaagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaatcat |
4189552 |
T |
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| Q |
201 |
attca |
205 |
Q |
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||||| |
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| T |
4189553 |
attca |
4189557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 4192536 - 4192671
Alignment:
| Q |
64 |
tagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaagatttgaacgagataaagcaaatggtg |
163 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
4192536 |
tagcttaaatattttacactttgaaccaaaactcaaagactcagttcgtgccacgttcaatctcacgcttgaagatttgatcaagataaagcaaatggta |
4192635 |
T |
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| Q |
164 |
ttatcaaaatgggaattttatgatacaaatgaatca |
199 |
Q |
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| T |
4192636 |
tcatcaaaattggaagttgttgataaaaatgaatca |
4192671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 4233986 - 4234164
Alignment:
| Q |
2 |
ttcacaaatagctggaccgagatcatatccacgattttcccaagcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaag |
101 |
Q |
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|||||||| | |||||| ||||| ||| ||| ||| ||||||| ||||||||||| ||| | ||||| || ||||||| |||||||||||||| |||| |
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| T |
4233986 |
ttcacaaaaaactggacggagataataaccatgatgttcccaaatgaaaaaggaaatgaaagaagcttgaagattttaccttttgaaccaaaactcgaag |
4234085 |
T |
|
| Q |
102 |
actccgttcgtgccacattcaatctcacgcgtgaagatttgaacgagataaagcaaatggtgttatcaaaatgggaatt |
180 |
Q |
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| T |
4234086 |
actatgttcgttctacattcaagctcacacgtgaagatttgaataagataaagcaaatggtattatcaaaatgggaatt |
4234164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 4196279 - 4196438
Alignment:
| Q |
38 |
ttcccaagcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaag |
137 |
Q |
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||||||| ||||||||||||||| | |||| || |||||| ||||||||||| || |||||||| ||||||| || ||||| ||||| ||||||| |
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| T |
4196279 |
ttcccaaatgaaaaaggaaacgaaagatgcttgaagattttagcttttgaaccaaacctcgaagactctcttcgtgctacgttcaagctcacacgtgaag |
4196378 |
T |
|
| Q |
138 |
atttgaacgagataaagcaaatggtgttatcaaaatgggaattttatgatacaaatgaat |
197 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||| | || |||||||||| |
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| T |
4196379 |
atttgaacaagataaagcaaatggtgttaacaaaatgggaattattggacacaaatgaat |
4196438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 4251038 - 4251178
Alignment:
| Q |
38 |
ttcccaagcgaaaaaggaaacgaacgtagcttaaatattttacactttgaaccaaaacttgaagactccgttcgtgccacattcaatctcacgcgtgaag |
137 |
Q |
| |
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|||||||| ||||||||||| || | |||||||| ||||| | ||||||||| |||| |||||||| |||||||| || || || |||| | ||||| |
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| T |
4251038 |
ttcccaagtgaaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaag |
4251137 |
T |
|
| Q |
138 |
atttgaacgagataaagcaaatggtgttatcaaaatgggaa |
178 |
Q |
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||||| | |||||||||||| |||||||| | ||||||| |
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| T |
4251138 |
atttggataagataaagcaaagagtgttatctacatgggaa |
4251178 |
T |
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