View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8747_low_19 (Length: 215)
Name: NF8747_low_19
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 5233264 - 5233084
Alignment:
| Q |
22 |
agggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatt---nnnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5233264 |
agggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatttaaaaaaaaaa |
5233165 |
T |
|
| Q |
119 |
nnnnnnttactctcataatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5233164 |
aaaaaattactctcataatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtg |
5233084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 17129161 - 17129075
Alignment:
| Q |
22 |
agggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaaga |
108 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||| || | ||| |||||| ||||||||||||||||| || ||||| |
|
|
| T |
17129161 |
agggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttcagccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University