View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_low_2 (Length: 479)
Name: NF8747_low_2
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 222 - 464
Target Start/End: Complemental strand, 52011632 - 52011390
Alignment:
| Q |
222 |
atgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaagg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011632 |
atgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaagg |
52011533 |
T |
|
| Q |
322 |
ggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011532 |
ggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaa |
52011433 |
T |
|
| Q |
422 |
attcttgctaaccatgctgatggaatggtttcgcttgatggtg |
464 |
Q |
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| T |
52011432 |
attcttgctaaccatgctgatggaatggtttcgcttgatggtg |
52011390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 52011877 - 52011630
Alignment:
| Q |
1 |
tcagaggaaggaaataacaaaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcgatggtgct |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011877 |
tcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcgatggtgct |
52011778 |
T |
|
| Q |
101 |
gatgatgagattcagaccaacgtgtcaattcgtagaaatcggtacaggaaatataacaaagacgctgcaaagagatatgcatcacaaattcacactgttt |
200 |
Q |
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| T |
52011777 |
gatgatgagattcagaccaacgtgtcaattcgtagaaatcggtacaggaaatataacaaagacgctgctaagagatatgcatcacaaattcacactgttt |
52011678 |
T |
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| Q |
201 |
ctgagaatgaagacgatcatcatgtggaacatgaagttgatgttgatg |
248 |
Q |
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| T |
52011677 |
ctgtgaatgaagacgatcatcatgtgggacatgaaattgatgatgatg |
52011630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 154 - 464
Target Start/End: Complemental strand, 52001832 - 52001525
Alignment:
| Q |
154 |
taacaaagacgctgcaaagagatatgcatcacaaattcacactgtttctgagaatgaagac---gatcatcatgtggaacatgaagttgatgttgatgat |
250 |
Q |
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|||||||||| |||||||||||| ||| |||| ||||| | |||||| |||||| |||| ||| || ||||||||||||||||||||| |||| |
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| T |
52001832 |
taacaaagacactgcaaagagatttgcgtcacgcattcatagtgtttcagagaataaagaaaaagatgatgatgtggaacatgaagttgatgatgat--- |
52001736 |
T |
|
| Q |
251 |
gcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatttgggttc |
350 |
Q |
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|||||||| ||||||||| ||||| ||||||||||||| ||||||||| | |||||||| |||| ||| |||| | |||||| ||| ||||||| |
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| T |
52001735 |
---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgtcgatgaatcccttacttgggttt |
52001639 |
T |
|
| Q |
351 |
cgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatggaatggt |
450 |
Q |
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| ||| || || |||||||| ||||||| ||| || | |||||||| ||| |||||||||||||||||||||||| || |||| ||||||| | | |
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| T |
52001638 |
caaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatggacttgc |
52001539 |
T |
|
| Q |
451 |
ttcgcttgatggtg |
464 |
Q |
| |
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|||||||||||||| |
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| T |
52001538 |
ttcgcttgatggtg |
52001525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 460
Target Start/End: Original strand, 51987888 - 51988104
Alignment:
| Q |
244 |
tgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatt |
343 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||| ||||||||||| ||| |||| || ||||||| |||||||||| ||||| | ||||| ||||| |
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| T |
51987888 |
tgatgatggttctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatt |
51987987 |
T |
|
| Q |
344 |
tgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatg |
443 |
Q |
| |
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||| | | ||| || | ||||||||||| | | ||| ||||| |||||||| ||||||||| ||| ||||| |||||||| ||||||||||||| |
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| T |
51987988 |
tggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatg |
51988087 |
T |
|
| Q |
444 |
gaatggtttcgcttgat |
460 |
Q |
| |
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|| | |||||||||| |
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| T |
51988088 |
ccattgcttcgcttgat |
51988104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 243 - 463
Target Start/End: Complemental strand, 11749420 - 11749200
Alignment:
| Q |
243 |
ttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttat |
342 |
Q |
| |
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||||||||| ||||||||| |||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||| ||| ||||| | |||||| |||| |
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| T |
11749420 |
ttgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttat |
11749321 |
T |
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| Q |
343 |
ttgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgat |
442 |
Q |
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||||||||||||||| || |||||||||||||||| ||||||| | |||||||| ||| ||||| ||||| ||||| |||||||| |||| |||| |
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| T |
11749320 |
ttgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgat |
11749221 |
T |
|
| Q |
443 |
ggaatggtttcgcttgatggt |
463 |
Q |
| |
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||| ||||||| ||||||||| |
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| T |
11749220 |
ggattggtttcccttgatggt |
11749200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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