View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8747_low_3 (Length: 391)
Name: NF8747_low_3
Description: NF8747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8747_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 14633400 - 14633043
Alignment:
| Q |
16 |
acatcataacaagaatacatctgaatcaacgaactaacaacactaacattcttatccaaaccagtaacaacaccaacacaatgaatttgtttccccaaac |
115 |
Q |
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| T |
14633400 |
acatcataacaagaatacatttgaatcaacgaactacaaacactaacattcttatccaaaccagtaacaacaccaacacaatgaatttgtttccccaaac |
14633301 |
T |
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| Q |
116 |
caaaatcatttaaacaaacaacagatttcaaaacataaggcaaagagtaagaatcaaacgagagtccgagacgtcgaacggagcggaatatcgaaacagc |
215 |
Q |
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| T |
14633300 |
caaaatcatttaaacaaacaacagatttcaaaacataaggcaaagagtaagaatcaaacgagagtccgagacgtcgaacggagcggaatatcgaaacagc |
14633201 |
T |
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| Q |
216 |
gagtttagcgtttgatgagtaaagtgcgtagatgatgttgttgtagacgaagatgggaaatggacggttgtgattgaaggtgaagatggagtaggagtag |
315 |
Q |
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| T |
14633200 |
gagtttagcgtttgatgagtaaagtgcgtagatgatgttgttgtagacgaagatgggaaatggacggttgtgattgaaggtgaagattgagtaggagtag |
14633101 |
T |
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| Q |
316 |
gatgggtaattgagggaagcggttttgtgaatgaaacgggagaggttgatgtcgtttt |
373 |
Q |
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| T |
14633100 |
gatgggtaattgagggaagcggttttgtgaatgaaacgggagaggttgatgtcgtttt |
14633043 |
T |
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