View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_1 (Length: 589)
Name: NF8748_high_1
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Complemental strand, 45210317 - 45209765
Alignment:
| Q |
17 |
aagaaggatccaacaattatagacttgcgccctggaacgtcctataataaacaatttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaag |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45210317 |
aagaaggatccaacaattatagacttgcaccctggaacgccctataataaacaatttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaag |
45210218 |
T |
|
| Q |
117 |
atccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaatttcactttgaaaacacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45210217 |
atccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaatttcactttgaaaacacc |
45210118 |
T |
|
| Q |
217 |
aggaccaggttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaagcaatttgtaagtatatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45210117 |
aggaccaggttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaagcaatttgtaagtatatt |
45210018 |
T |
|
| Q |
317 |
ttgtaaacctacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcacttaattatagcatagactat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45210017 |
ttgtaaacctacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcac----ttatagcatagactat |
45209922 |
T |
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| Q |
417 |
ttctatgacaacacatattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttc |
516 |
Q |
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| T |
45209921 |
ttctatgacaacacatattatgatttacttataccttaattaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttc |
45209822 |
T |
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| Q |
517 |
tagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaata |
573 |
Q |
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| T |
45209821 |
tagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaata |
45209765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 5007817 - 5007906
Alignment:
| Q |
475 |
ttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctata |
564 |
Q |
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| T |
5007817 |
ttgcagtgacatggaatgttacatgcacatattcacaatttctggctcagaaaactccgacttgctgtgtctccctctcatctttctata |
5007906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 5007166 - 5007256
Alignment:
| Q |
72 |
ttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagc |
162 |
Q |
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||||||||||||||||||||||||| || || ||||||| |||||||| | | ||||||| ||||||||| ||||||| |||||||| |
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| T |
5007166 |
ttgcaaattgctgcaaaggtggtgtgcttagttcatgggctcaagatcctaccatggcagttggggcgtttcaaatcagtgttggtagagc |
5007256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 562
Target Start/End: Original strand, 5550497 - 5550602
Alignment:
| Q |
457 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
556 |
Q |
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|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||| ||| || ||| |||||||||| |
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| T |
5550497 |
taacataactctgattgtttgcagtgacatggaatgtgacatgcacatattcacaatttttagctcaacaaactccaacttgttgtgttgccctctcatc |
5550596 |
T |
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| Q |
557 |
tttcta |
562 |
Q |
| |
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||||| |
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| T |
5550597 |
attcta |
5550602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 564
Target Start/End: Complemental strand, 5540344 - 5540216
Alignment:
| Q |
431 |
atattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacct |
530 |
Q |
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||||||||||||||| | |||||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| || |||| || |
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| T |
5540344 |
atattatgatttactaagaccttaac----attactctgatttttt-cagtgacatggaatgtgagatgcacatattcacaatttctagctccgaaaact |
5540250 |
T |
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| Q |
531 |
ccaaattgctgcgtttccctctcatctttctata |
564 |
Q |
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| T |
5540249 |
ccaacttgttgtgtcgctctctcatcattctata |
5540216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 5541082 - 5540908
Alignment:
| Q |
60 |
ataataaacaatttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtag |
159 |
Q |
| |
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||||| ||||| |||||||||| |||| ||| ||||| || || |||||| ||| ||||| |||||| ||| |||| ||||||||||| |||| ||| |
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| T |
5541082 |
ataatcaacaaattgcaaattgttgcagaggcggtgttcttagctcatgggaacaggatccaataaatgcggtttcagcatttcaagtcagcgtcgatag |
5540983 |
T |
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| Q |
160 |
agctgg--caa-taacaaaactgccatcatagcgccgcagaatttcactttgaaaacaccaggaccaggttatacatg |
234 |
Q |
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|||||| ||| ||||||||||| ||| | |||| | |||||||| |||||| |||| ||||||||||||||||| |
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| T |
5540982 |
agctggtacaactaacaaaactg---tcaaactgccgaaaaatttcaccttgaaagcacctggaccaggttatacatg |
5540908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 5549722 - 5549816
Alignment:
| Q |
73 |
tgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggca |
167 |
Q |
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||||||||| ||||||||||| ||||| || |||||||||| ||||| ||||||||||||| | ||||| || | ||| ||||||||||||| |
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| T |
5549722 |
tgcaaattgttgcaaaggtggagtactcagctcatgggcacaggatccaacaaatgcagttgcgtcatttcaggttattgttggtagagctggca |
5549816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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