View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_19 (Length: 249)
Name: NF8748_high_19
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8947225 - 8946980
Alignment:
| Q |
1 |
cctgatttacctttgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatg |
100 |
Q |
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| T |
8947225 |
cctgatttacctttgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatg |
8947126 |
T |
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| Q |
101 |
tcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947125 |
tcattattggtttgattgactcaggtgtttggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatg |
8947026 |
T |
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| Q |
201 |
tcaatttgcaaataccaacaattcatcattttgcaacacgaaactc |
246 |
Q |
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| T |
8947025 |
tcaatttgaaaatagcaacaattcatcattttgcaacaagaaactc |
8946980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 8973270 - 8973515
Alignment:
| Q |
1 |
cctgatttacctttgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatg |
100 |
Q |
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||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| |||||| |
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| T |
8973270 |
cctgatttacccttgaagcttgacacaactcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatg |
8973369 |
T |
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| Q |
101 |
tcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatg |
200 |
Q |
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| T |
8973370 |
tcattgttggtatgattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatg |
8973469 |
T |
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| Q |
201 |
tcaatttgcaaataccaacaattcatcattttgcaacacgaaactc |
246 |
Q |
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| T |
8973470 |
tcaatttgaaaataccaacaattcatctttttgcaacaagaaactc |
8973515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 8961871 - 8962105
Alignment:
| Q |
4 |
gatttacctttgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtca |
103 |
Q |
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| T |
8961871 |
gatttacctttgaagcttgacacaacatactcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtca |
8961970 |
T |
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| Q |
104 |
ttattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtca |
203 |
Q |
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| T |
8961971 |
ttgttggtgtgattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtca |
8962070 |
T |
|
| Q |
204 |
atttgcaaataccaacaattcatcattttgcaaca |
238 |
Q |
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| T |
8962071 |
atttgaaaataccaacaattcatctttttgcaaca |
8962105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 21688373 - 21688169
Alignment:
| Q |
4 |
gatttacctttgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtca |
103 |
Q |
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|||||||| ||||| ||| |||||||||||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||| |
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| T |
21688373 |
gatttacccttgaagcttgacacaacacactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatca |
21688274 |
T |
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| Q |
104 |
ttattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtca |
203 |
Q |
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|| ||||| | || ||| | ||||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | |||||||| |
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| T |
21688273 |
ttgttggtgtaatagacactggtgtttggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtca |
21688174 |
T |
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| Q |
204 |
atttg |
208 |
Q |
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||||| |
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| T |
21688173 |
atttg |
21688169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 34963947 - 34963779
Alignment:
| Q |
23 |
acacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactc |
122 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||| ||| || |||| | ||| ||||| ||| |||| | ||| | ||| |||||||| | |
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| T |
34963947 |
acacaacacattcacctcaattccttggcctcaatcccaacataggcgcttggcatgattcgaagttcggtgaagacataattgtaggtgtgattgacac |
34963848 |
T |
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| Q |
123 |
aggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
191 |
Q |
| |
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||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
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| T |
34963847 |
aggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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