View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8748_high_2 (Length: 501)
Name: NF8748_high_2
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 46103832 - 46103350
Alignment:
| Q |
1 |
aacaaattgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagttttattaggcaaatttcattactccatgtcaatctatg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46103832 |
aacaaatttctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagttttattaggcaaatttcattactccatgtcaatttata |
46103733 |
T |
|
| Q |
101 |
accctaacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttatagacacatttatagtccatatcttatggtatataaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46103732 |
accctaacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttatagacacttttatagtccatatcttatggtatataaat |
46103633 |
T |
|
| Q |
201 |
ggccagaaaccaaaatatctttgaaggcaaagaggttccagaagatcacacaattttaaaagcaggttacagtatatcggaacaccgaggatttctcttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46103632 |
ggccagaaaccaaaatatctttgaaggcaaagaggttccagaagatcacacaattttaaaagcaggttacagtatatcggaacaccgaggatttctcttt |
46103533 |
T |
|
| Q |
301 |
tcttgctttgactgtgaagtagcagcagtctcacccctgccaaactcatgggaagtaataagcgtacaacactttgggaatcagaatttgactaggactt |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46103532 |
tcttgctttgactgtgaagtagcaacagtctcacccctgccaaactcatgggaagtaataagcgtacaacactttggaaatcagaatttgactaggactt |
46103433 |
T |
|
| Q |
401 |
atccttagagttattatcatcatttttggagtcatgccacaggttcatcaacagtttgattgtaagcaactacctgattgatg |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46103432 |
atccttagagttattatcatcatttttggagtgatgccacaggttcatcaacagtttgattgtaagcaactacctgattgatg |
46103350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 42913309 - 42913364
Alignment:
| Q |
4 |
aaattgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaat |
59 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |||||| || ||||||| |
|
|
| T |
42913309 |
aaattgctcaatgaaattaaaaactaaactatttcattcaaaataacagttttaat |
42913364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 24912084 - 24912245
Alignment:
| Q |
7 |
ttgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagtttta-ttaggcaaatttcattactccatgtcaatctatgaccct |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||| |||||||| || ||||| || |||||| | |||| | ||||| || ||| ||||| |
|
|
| T |
24912084 |
ttgctcaatgaaattaaaaactatactatttcaatcaaaataacatttttagtaattttatttgggcaaaaattattagtgtatgtctat-tataaccct |
24912182 |
T |
|
| Q |
106 |
aacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttatagaca |
168 |
Q |
| |
|
|||||||| | |||| ||||||| || |||||| || ||||||||||| | ||||||||||| |
|
|
| T |
24912183 |
aacaattgttaattgtgacaaaacaagacgtcaagtttctctaacactttatttttatagaca |
24912245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 46383476 - 46383630
Alignment:
| Q |
8 |
tgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagtttta-ttaggcaaatttcattactccatgtcaatctatgacccta |
106 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||| || ||||| | ||||| || ||||||||| | || | ||||| || ||| |||||| |
|
|
| T |
46383476 |
tgctcaatgaaattaaagattgtactatttcttttaaaataacagttttagttattttatttgggcaaattttactagtttatgtctatttataacccta |
46383575 |
T |
|
| Q |
107 |
acaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcactttt |
161 |
Q |
| |
|
||||||| | |||| |||||||||| | |||||||||||||| |||||| |||| |
|
|
| T |
46383576 |
acaattgttaattgagacaaaataagctatcaacttcctctaatacttcattttt |
46383630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 36777974 - 36777935
Alignment:
| Q |
7 |
ttgctcaatgaaattaaagactatactatttcatttaaaa |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36777974 |
ttgctcaatgaaattaaagactatactatttcattgaaaa |
36777935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 5006706 - 5006866
Alignment:
| Q |
4 |
aaattgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagttttattag-gcaaatttcattactccatgtcaat---ctat |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||| || ||||| |||||||||| | |||||||| ||| || ||||| || ||| |
|
|
| T |
5006706 |
aaattgctcaatgaaattaaagac--tactatttatttcaaaataacagttttagtagttttatttgagcaaattttattggtctatgtctatttattat |
5006803 |
T |
|
| Q |
100 |
gaccctaacaattgctga-ttgggacaaaataaaccgtcaacttcctctaacacttcactttt |
161 |
Q |
| |
|
|| |||||||||| ||| || ||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
5006804 |
aactctaacaattgttgatttaagacaaaataaaccgtcaactttctccaacacttcattttt |
5006866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 16492155 - 16492218
Alignment:
| Q |
105 |
taacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttatagaca |
168 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| ||||||||| | |||| | ||||||||| |
|
|
| T |
16492155 |
taacaattgctaatttggacaaaataaaccgtcaatttcctctaatatttcattcttatagaca |
16492218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 7827686 - 7827624
Alignment:
| Q |
102 |
ccctaacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttata |
164 |
Q |
| |
|
|||||||||||| | ||| |||||||||| | ||||||||||| ||||||||||| ||||||| |
|
|
| T |
7827686 |
ccctaacaattgttaattaggacaaaatatatcgtcaacttccactaacacttcatttttata |
7827624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 47377718 - 47377557
Alignment:
| Q |
7 |
ttgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagtttta-ttaggcaaatttcattactccatgtcaatctatgaccct |
105 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||| |||||| || |||| |||||||| || ||||| ||| |||| |||||| || ||| ||||| |
|
|
| T |
47377718 |
ttgctcaattaaattaaagacgatattatttcattcaaaataaca-gtttagtagttttatttgggcaagttttattagctcatgtctatttataaccct |
47377620 |
T |
|
| Q |
106 |
aacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttatagaca |
168 |
Q |
| |
|
|||||| | | ||| | ||||||||| || |||||||| || || | |||| ||||||||||| |
|
|
| T |
47377619 |
aacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatttttatagaca |
47377557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7827813 - 7827736
Alignment:
| Q |
1 |
aacaaattgctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagttttattaggcaaattt |
78 |
Q |
| |
|
||||| |||||||| || ||||||||||||| |||||||||||||| || |||||||| ||||||| || |||||| |
|
|
| T |
7827813 |
aacaatttgctcaaataatttaaagactatacaatttcatttaaaatgacaattttaataattttatttgggaaattt |
7827736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University