View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_20 (Length: 246)
Name: NF8748_high_20
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 29306501 - 29306451
Alignment:
| Q |
187 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataat |
237 |
Q |
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| T |
29306501 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataat |
29306451 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 29297736 - 29297691
Alignment:
| Q |
192 |
aaaaataaactaatgatcataacacaaacctcaactgaagaataat |
237 |
Q |
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| T |
29297736 |
aaaattaaactaatgagcataacacaaaccttaactgaagaataat |
29297691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 29298007 - 29297939
Alignment:
| Q |
101 |
ttgaaagtccattcttattatttactttttct-ggataatttgaaaattctgcatgaagcatgctttgt |
168 |
Q |
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||||||||||||| | ||||||| ||||| | |||||| ||||||| ||||||||||||||||||||| |
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| T |
29298007 |
ttgaaagtccattatgattatttgtttttttttggataagttgaaaactctgcatgaagcatgctttgt |
29297939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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