View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_23 (Length: 240)
Name: NF8748_high_23
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 41103600 - 41103802
Alignment:
| Q |
27 |
ttatactgtcttgcttaggattggtcgaaataagtgattggaggttagtaatatgctta-cagaattggagctgcaagattcatgggacctcaatgtgca |
125 |
Q |
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| T |
41103600 |
ttatactgtcttgcttaggattggtcgaaataagtgattggaggttagtaatatgcttatcagaattggagctgcaagattcatgggacctcaatgtgca |
41103699 |
T |
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| Q |
126 |
acaatgaggcatagaagatttggtt-----------ttggattatgaactattttctggtttttgcttgtttagaagtgtgttgtttcaatttctgtcaa |
214 |
Q |
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| T |
41103700 |
acaatgaggcatagaagatttggttttggaactgtattggattatgaactattttctggtttttgcttgtttagaagtgtgttgtttcaatttctgtcaa |
41103799 |
T |
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| Q |
215 |
gca |
217 |
Q |
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||| |
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| T |
41103800 |
gca |
41103802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 41089218 - 41089322
Alignment:
| Q |
33 |
tgtcttgcttaggattggtcgaaataagtgattggaggttagtaatatgctta-cagaattggagctg---caagattcatgggacctcaatgtgcaaca |
128 |
Q |
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| T |
41089218 |
tgtcttgcttaggattggtagaaatatgtgattgtaggttagtaatatgcttatgagaattggagctgcatcatgattcatgtgaccttaatatgcaaga |
41089317 |
T |
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| Q |
129 |
atgag |
133 |
Q |
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||||| |
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| T |
41089318 |
atgag |
41089322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 41081238 - 41081281
Alignment:
| Q |
90 |
attggagctgcaagattcatgggacctcaatgtgcaacaatgag |
133 |
Q |
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| T |
41081238 |
attggagctgcaagattcatggaacctcaatgtgcaagaatgag |
41081281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 41081208 - 41081244
Alignment:
| Q |
33 |
tgtcttgcttaggattggtcgaaataagtgattggag |
69 |
Q |
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| T |
41081208 |
tgtcttgctcaggattggtagaaataagtgattggag |
41081244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 4132201 - 4132133
Alignment:
| Q |
151 |
ttggattatgaactattttctggtttttgcttgtttagaagtgtgttgtttcaatttctgtcaagcaag |
219 |
Q |
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| T |
4132201 |
ttggtttatgaactattttctagtttttgcttgtttggaagtgtggtgtttctctttctgccaaccaag |
4132133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 4132306 - 4132243
Alignment:
| Q |
71 |
ttagtaatatgctta-cagaattggagctgcaagattcatgggacctcaatgtgcaacaatgag |
133 |
Q |
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|||||||||| |||| ||||||||||||| || |||||||||||||||||| |||| ||||||| |
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| T |
4132306 |
ttagtaatatacttatcagaattggagctacatgattcatgggacctcaatatgcagcaatgag |
4132243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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