View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_25 (Length: 238)
Name: NF8748_high_25
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 3376034 - 3375859
Alignment:
| Q |
49 |
ggttcaaattaaatttatcctttctttacttctcaaatatttgatataataaaccctttttcttaaaacctatctatcctgattatttctgcaatttatg |
148 |
Q |
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| T |
3376034 |
ggttcaaattaaatttatcctttctttacttctcaaatatttgatataataaaccctttttcttaaaacctatctatcctgattatttctgcaatttatg |
3375935 |
T |
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| Q |
149 |
aaatgggcattgaaaagcttagatcttgtacaatctaccttgagaactctaagccctacattgctatgatcctttt |
224 |
Q |
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| T |
3375934 |
aaatgggcgttgaaaagcttagatcttgtacaatctaccttgagaactctaagccctacattgctatgatcctttt |
3375859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 3435039 - 3434962
Alignment:
| Q |
147 |
tgaaatgggcattgaaaagcttagatcttgtacaatctaccttgagaactctaagccctacattgctatgatcctttt |
224 |
Q |
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| T |
3435039 |
tgaaatgggcgctgaaaagcctagatcttgtgcaacctactttgagaattctaaaccctactttgccatgatcctttt |
3434962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3376080 - 3376050
Alignment:
| Q |
1 |
tgctcaagtgttcttcccttagtatcatttc |
31 |
Q |
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| T |
3376080 |
tgctcaagtgttcttcccttagtatcatttc |
3376050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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