View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_3 (Length: 472)
Name: NF8748_high_3
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 4808394 - 4808819
Alignment:
| Q |
17 |
agggtcatattagaaaaactaaacggtggatcttggtggggttgggctgctagcatgtctagtcctcaacaaatttttaacatatagtctaatatgtgag |
116 |
Q |
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| T |
4808394 |
agggtcatattagaaaaactaaacggtggatcttggtggggttgggctgctagcatgtctagtcctcaataaatttttaacatatagtctaatatgtgag |
4808493 |
T |
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| Q |
117 |
tatgtgacattatttacagtcaatagtaaaaggccatagaaagtattcgaatccacatataagattatttatagtcgatattaaactaatcaatcaataa |
216 |
Q |
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| T |
4808494 |
tatgtgacattatttacggtcaatagtaaaaggc-atagaaagtattcgaatccacatataagattatttatagtcgatattaaactaatcaatcaataa |
4808592 |
T |
|
| Q |
217 |
attgactagtaaaataccagttaaatagtaaaagaccatagaaagcatttgaacccacaattttttgcttctatggacataacctgcatgtatgagttta |
316 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
4808593 |
attgactagtaaaatatcagttaaatagtaaaagatcatagaaagcatttgaacccacaatcttttgcttctgtggacataacctgcatgtatgagttta |
4808692 |
T |
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| Q |
317 |
ttcgttagactatttaaagcaaacacaaattcaaccaaccaatcaatataacacagtcataaaatttattactataatctggattacaaagtatttcctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
4808693 |
ttcgttagactatttaaagcaaacacaaattcaaccaaccaatcaatataacacagtcataaaatttattactataatttggattacaaagcatttcctc |
4808792 |
T |
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| Q |
417 |
tcaagtgatatgtgtgacacatatata |
443 |
Q |
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| T |
4808793 |
tcaagtgatatgtctgacacatatata |
4808819 |
T |
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