View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_6 (Length: 413)
Name: NF8748_high_6
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 6915882 - 6916277
Alignment:
| Q |
18 |
agaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttact |
117 |
Q |
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| T |
6915882 |
agaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttact |
6915981 |
T |
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| Q |
118 |
caacgtgctgattttgattatttacataagaagcaatctggaggacaaggacaatatggacgagtgattggatatattgaaccacttcctgctgggtcag |
217 |
Q |
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| T |
6915982 |
caacgtgctgattttgattatttacataagaagcaatctggagggcaaggacaatatggacgagtgattggatatattgaaccacttcctgctgggtcag |
6916081 |
T |
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| Q |
218 |
gaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctgg |
317 |
Q |
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| T |
6916082 |
gaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctgg |
6916181 |
T |
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| Q |
318 |
tgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggc |
413 |
Q |
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| T |
6916182 |
tgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggc |
6916277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
66 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
165 |
Q |
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| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
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| Q |
166 |
ggacaatatggacgagtgattgg |
188 |
Q |
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| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
190 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
289 |
Q |
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| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
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| Q |
290 |
aaggttttaaagaagctgccaactc |
314 |
Q |
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| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 15038167 - 15038074
Alignment:
| Q |
320 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggc |
413 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggc |
15038074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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