View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_high_8 (Length: 378)
Name: NF8748_high_8
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 162 - 358
Target Start/End: Original strand, 242676 - 242872
Alignment:
| Q |
162 |
ttgcggatggctccactccgaatagttacttccgccaccgtctctcagcctccacccaccggtggcaaaattcgcggtatcatgaaacccnnnnnnntct |
261 |
Q |
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| T |
242676 |
ttgcggatggctccactccgaatagttacttccgccaccgtctctcagcctccacccaccggtggcaaaattcgcggtatcatgaaacccaaaaaaatct |
242775 |
T |
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| Q |
262 |
cccctgagatgcaagacctcgtcggccaacccgagatttcccgaacccaagccctcaagagtatttgggcccacatcaaggaacacaatcttcaggt |
358 |
Q |
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| T |
242776 |
cccctgagatgcaagacctcgtcggccaacccgagatttcccgaacccaagccctcaagagtatttgggcccacattaaggaacacaatcttcaggt |
242872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 242491 - 242637
Alignment:
| Q |
1 |
ataccaacaaagattatctattcaaacaaaccctcgctgtgagtgaaag------agaaagaaagaagatggcggtttcaatggctaccggactgttatt |
94 |
Q |
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| T |
242491 |
ataccaacaaagattatctattcaaacaaaccctcgctgtgagtgaaagaaagaaagaaagaaagaagatggcggtttcaatggctaccggactattatt |
242590 |
T |
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| Q |
95 |
atcatcatctcctttaactcttaggactccaaggtttgcgtttcaca |
141 |
Q |
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| T |
242591 |
atcatcatctactttaactcttaggactccaaggtttgcgtttcaca |
242637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 21207445 - 21207359
Alignment:
| Q |
273 |
caagacctcgtcggccaacccgagatttcccgaacccaagccctcaagagtatttgggcccacatcaaggaacacaatcttcaggtt |
359 |
Q |
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| T |
21207445 |
caagaccttgtcggccttcccgagatttcacgaacccaagcactcaagcacatttgggcctacattaagtaacacaatcttcaggtt |
21207359 |
T |
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