View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8748_low_11 (Length: 369)

Name: NF8748_low_11
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8748_low_11
NF8748_low_11
[»] chr7 (7 HSPs)
chr7 (69-352)||(8354940-8355223)
chr7 (1-69)||(8354396-8354464)
chr7 (198-352)||(8349004-8349152)
chr7 (78-181)||(8410644-8410743)
chr7 (219-304)||(8410745-8410830)
chr7 (69-129)||(8348906-8348966)
chr7 (243-288)||(8361502-8361547)
[»] chr4 (1 HSPs)
chr4 (122-304)||(51650264-51650442)
[»] chr6 (2 HSPs)
chr6 (1-69)||(7556120-7556188)
chr6 (4-49)||(32047197-32047242)
[»] chr5 (6 HSPs)
chr5 (1-58)||(41264387-41264444)
chr5 (1-49)||(2243320-2243368)
chr5 (1-49)||(7113618-7113666)
chr5 (1-49)||(22780348-22780396)
chr5 (13-58)||(37077666-37077711)
chr5 (1-49)||(7215472-7215520)
[»] chr1 (4 HSPs)
chr1 (1-49)||(3231981-3232029)
chr1 (2-69)||(15321044-15321111)
chr1 (2-49)||(46080994-46081041)
chr1 (5-49)||(52432684-52432728)
[»] chr3 (1 HSPs)
chr3 (2-49)||(54437660-54437707)
[»] chr2 (2 HSPs)
chr2 (1-49)||(16576271-16576319)
chr2 (1-49)||(38576941-38576989)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 69 - 352
Target Start/End: Original strand, 8354940 - 8355223
Alignment:
Q  69 agtaggcaataataagtaaaaaccagccaaaactagcaaagctattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcgga 168  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354940 agtaagcaataataagtaaaaaccagccaaaactagcaaaactattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcgga 8355039  T
Q  169 aattgagaagtggatgtaaactctccttccttgtcatggaagagttcggaagaaaggtggtgattgaggaatttcacatcattcccaattgtcttcttga 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8355040 aattgagaagtggatgtaaactctccttccttgtcatggaagagttcggaagaaaggtggcgattgaggaatttcacatcattcccaattgtcttcttga 8355139  T
Q  269 gagtaggaaaatggaaagatacagtaaatggttcaacttcaacaaacaactcaaccacaaatttgccataagcactacatattc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355140 gagtaggaaaatggaaagatacagtaaatggttcaacttcaacaaacaactcaaccacaaatttgccataagcactacatattc 8355223  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8354396 - 8354464
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 69  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354396 cacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 8354464  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 8349004 - 8349152
Alignment:
Q  198 cttgtcatggaagagttcggaagaaaggtggtgattgaggaatttcacatcattcccaattgtcttcttgagagtaggaaaatggaaagatacagtaaat 297  Q
    ||||| |||||||| || || ||||||||||  ||||||||||||||||||||| |||||||  || |||||||| ||| || |||||||| ||||||||    
T  8349004 cttgtaatggaagaatttggtagaaaggtggcaattgaggaatttcacatcatttccaattgatttgttgagagttggacaacggaaagatgcagtaaat 8349103  T
Q  298 ggttcaacttcaacaaacaactcaaccacaaatttgccataagcactacatattc 352  Q
    ||      ||| | |||||||||||||||||||||||| ||||||||||||||||    
T  8349104 gg------ttctaaaaacaactcaaccacaaatttgccgtaagcactacatattc 8349152  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 8410644 - 8410743
Alignment:
Q  78 taataagtaaaaaccagccaaaactagcaaagctattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaaattgagaa 177  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||    |||||||| |||| |||||||||||||||||||||||| | |||||    
T  8410644 taataagtaaaaaccagccaaaactagcaaagttatagagtagccaagaa----atagatacctttctcttgtaattgtgaattcctcggaactcgagaa 8410739  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 8410745 - 8410830
Alignment:
Q  219 agaaaggtggtgattgaggaatttcacatcattcccaattgtcttcttgagagtaggaaaatggaaagatacagtaaatggttcaa 304  Q
    |||||||||| ||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||| | |||||||||||||||    
T  8410745 agaaaggtggagattgaggaatttcacaccattcccaattgtctggttgagagtaggacaatggaaaggtgcagtaaatggttcaa 8410830  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 8348906 - 8348966
Alignment:
Q  69 agtaggcaataataagtaaaaaccagccaaaactagcaaagctattgagtagccaagaaat 129  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||    
T  8348906 agtaggcaataataagtaaaaaccatccaaaactagcaaagctgtagactagccaagaaat 8348966  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 8361502 - 8361547
Alignment:
Q  243 cacatcattcccaattgtcttcttgagagtaggaaaatggaaagat 288  Q
    |||| |||||||||||| ||| |||||||||||| |||||||||||    
T  8361502 cacaccattcccaattgacttgttgagagtaggacaatggaaagat 8361547  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 51650442 - 51650264
Alignment:
Q  122 caagaaatagatagatacttttcccttgtaattgtgaattcctcggaaattg-agaagtggatgtaaactctccttccttgtcatggaagagttcggaag 220  Q
    |||||||||||||||||| |||||||||||  |||||| || |  ||||||  | |||||||||||||||||||||    ||||||||||||||  | ||    
T  51650442 caagaaatagatagatacctttcccttgtagctgtgaagtc-tgagaaattccaaaagtggatgtaaactctcctt----gtcatggaagagtttagcag 51650348  T
Q  221 aaaggtggtgattgaggaatttcacatcattcccaattgtcttcttgagagtaggaaaatggaaagatacagtaaatggttcaa 304  Q
    |||||||| |||| ||||||| |||| |||| ||||||| ||| ||||||||||||  | |||||||| |||||||||||||||    
T  51650347 aaaggtggcgattaaggaattgcacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaa 51650264  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7556120 - 7556188
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 69  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||| |||||||| | ||||||||    
T  7556120 cacatgttgaatgaatgatatgaataaatttaatgttcttgagatgaaaatgacaactcgctgtcataa 7556188  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 32047242 - 32047197
Alignment:
Q  4 atgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  32047242 atgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaa 32047197  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41264444 - 41264387
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaact 58  Q
    |||||||||||||||  ||||| | |||||||||||||||||||||||| ||||||||    
T  41264444 cacatgttgaatgaacaatatgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2243320 - 2243368
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  2243320 cacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaa 2243368  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7113618 - 7113666
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||||||    
T  7113618 cacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaa 7113666  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22780348 - 22780396
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||||||||||| |||||| ||||||||| |||| |||||||||||    
T  22780348 cacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaa 22780396  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 37077711 - 37077666
Alignment:
Q  13 gaatgatatgtagaagtttaatgttcttgagatgaaactgacaact 58  Q
    |||||| ||| |||||||||||||||||||||||||| ||| ||||    
T  37077711 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataact 37077666  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7215472 - 7215520
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    |||||||||||||||  ||||| | ||||||||||||||||| ||||||    
T  7215472 cacatgttgaatgaagaatatgaaaaagtttaatgttcttgatatgaaa 7215520  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3232029 - 3231981
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    |||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  3232029 cacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaa 3231981  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 15321111 - 15321044
Alignment:
Q  2 acatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 69  Q
    |||||||||||||| |||||| | || ||||||||| |||||| |||| |||||||| ||||| ||||    
T  15321111 acatgttgaatgaaggatatgaaaaaatttaatgtttttgagaagaaaatgacaactcgttgtaataa 15321044  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 46081041 - 46080994
Alignment:
Q  2 acatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||||| |||| || ||| ||||||||||||||||||||||||||    
T  46081041 acatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaa 46080994  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 52432728 - 52432684
Alignment:
Q  5 tgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    |||| |||||| || ||| ||||||||||||||||||||||||||    
T  52432728 tgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaa 52432684  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 54437707 - 54437660
Alignment:
Q  2 acatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||| |||||| |||||| |||||||||||||| |||||||||||    
T  54437707 acatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaa 54437660  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16576319 - 16576271
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||||||||||| || ||| |||||||| |||||||||||| ||||    
T  16576319 cacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaa 16576271  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38576941 - 38576989
Alignment:
Q  1 cacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 49  Q
    ||||||||||||||| || ||| |||| |||||||||||| ||||||||    
T  38576941 cacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaa 38576989  T

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