View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_12 (Length: 363)
Name: NF8748_low_12
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 82 - 354
Target Start/End: Original strand, 54395375 - 54395647
Alignment:
| Q |
82 |
ttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaaactcatccacttccgccatttgattcccctccaaccac |
181 |
Q |
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| T |
54395375 |
ttgatacatcttagcaataataggattacaaattccttccaactccttctgcttatcctcaaactcatccacttccgccatttgattcccctccaaccac |
54395474 |
T |
|
| Q |
182 |
tgtatagcatcttccacagccttctcaatcttctccttatcatcatgactcaacttcccaccaatcttctcatcctttattgtattcctcatattataag |
281 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54395475 |
tgtattgcatcttccacagccttctcaatcttctccttatcttcatgactcaacttcccaccaatcttctcatccttaattgtattcctcatattataag |
54395574 |
T |
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| Q |
282 |
cataattctcaagtgaattcttcgcctccactttcttcttcacctcttcgtcctctgccttatacttctctgc |
354 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54395575 |
cataattctcaattgaattcttcgcctccactttcttcttcacctcttcatcctctgccttatacttctctgc |
54395647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 23588825 - 23588713
Alignment:
| Q |
206 |
tcaatcttctccttatcatcatgactcaacttcccaccaatcttctcatcctttattgtattcctcatattataagcataattctcaagtgaattcttcg |
305 |
Q |
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||||| |||| |||||||||| | ||||||| | ||||||| || || || ||||| |||||||| || || ||||| |||||||||| |||||| | |
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| T |
23588825 |
tcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttgtaggcatagttctcaagtgcattcttgg |
23588726 |
T |
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| Q |
306 |
cctccactttctt |
318 |
Q |
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| T |
23588725 |
cctccactttctt |
23588713 |
T |
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