View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_15 (Length: 348)
Name: NF8748_low_15
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 331
Target Start/End: Original strand, 16569358 - 16569666
Alignment:
| Q |
23 |
atcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgctt |
122 |
Q |
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| T |
16569358 |
atcatgaagtgagaagacagaataagcaatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgctt |
16569457 |
T |
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| Q |
123 |
ccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgatgaggg |
222 |
Q |
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| T |
16569458 |
ccattttctaaagcttccgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacatctataattgatgaggg |
16569557 |
T |
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| Q |
223 |
aaacaaagaagactatataactagtggagacaaagcacggataagcgagaaaaaacacagaaattagtttacattagcgtaaatagtaaacatgtacatt |
322 |
Q |
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|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16569558 |
aaacaaagaagactttataactatttgagacaaagcacggataagcgagaaaaaacacagaaattagtttacattagcgtaaatagtaaacatgtacatt |
16569657 |
T |
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| Q |
323 |
ttgacgttc |
331 |
Q |
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| T |
16569658 |
ttgacgttc |
16569666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 16527859 - 16528127
Alignment:
| Q |
23 |
atcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgctt |
122 |
Q |
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| T |
16527859 |
atcatgaagtgagaagacacaataaactatgatagatgacattaaaggccaattcataaagaggttttcattctttcggactgtcttttctttgttgctt |
16527958 |
T |
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| Q |
123 |
ccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgatgaggg |
222 |
Q |
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| T |
16527959 |
ccattttctaaagcttcggcgtcatctgtggactctttgttaccattgtgattgtgaagtgtttcctgcagatagtgtacacaactataattgatgaggg |
16528058 |
T |
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| Q |
223 |
aaacaaagaagactatataactagtggagacaaagcacggataagcgagaaaaaacacagaaattagtt |
291 |
Q |
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| T |
16528059 |
aaacagagacgattatatgaacagtggagacaaagcacggataagatagaaaaaacacagaaattagtt |
16528127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 16588061 - 16588250
Alignment:
| Q |
27 |
tgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttctttactgcttccat |
126 |
Q |
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| T |
16588061 |
tgaagtgagacgacacaataagcaatgatagatgacattaaaggccaattcaaaaagaggttttcattcttttgaactgtcttttctttgctgcttccat |
16588160 |
T |
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| Q |
127 |
tttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgcagatagtgtaaacaactataattgat |
217 |
Q |
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| T |
16588161 |
tttctaaagcttcggcattacctttggactcttcgttaccattgtgattgtgaagtgtttcctgcggatagt-ttaataactataattgat |
16588250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 16519425 - 16519603
Alignment:
| Q |
23 |
atcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttcttt----ac- |
117 |
Q |
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||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||| ||| | ||||||| || |
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| T |
16519425 |
atcatgaagtgagaagacacagtaagcaatgatagatgacataaagggccaattcatcaagaggttttcattcttttgaactatcttttctttgtcaacc |
16519524 |
T |
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| Q |
118 |
----tgcttccattttcgaaagcttctgcatcacctttggattcttcgctaccattgtgattgtgaagtgtttcctgca |
192 |
Q |
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| T |
16519525 |
tttttgcttccattttctatagcttcagcatcatctatggactcactgctaccattgtgcttgtgaagtgtttcctgca |
16519603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 9008970 - 9008905
Alignment:
| Q |
51 |
atgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttcttta |
116 |
Q |
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| T |
9008970 |
atgatagatgacattaaaggccaattcctgaagagaatttcattcttttggactgtattttcttta |
9008905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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