View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_16 (Length: 344)
Name: NF8748_low_16
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 43749440 - 43749750
Alignment:
| Q |
16 |
gttttcacgttggggtggactgattttgaccaaatccattacccgacccaattaaatttaatttgtttggattagataaaatacttgtattttataatgt |
115 |
Q |
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| T |
43749440 |
gttttcacgttggggtggactgattttgaccaaatccattacccgacccacttaaatttaatttgtttggattagataaaatacttgtattttataatgt |
43749539 |
T |
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| Q |
116 |
caatccccgagttaag-----tcaatcctatgatgaacgggattgagttggttgggccaacaagagattaaaatataacctttaaacnnnnnnnnnnnnn |
210 |
Q |
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| T |
43749540 |
caatccccgagttaagttaactcaatcctatgatgaac-ggattgagctggttgggccaacaagagatt-aaatataacttttaaacaaaaaataaaaaa |
43749637 |
T |
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| Q |
211 |
gtatatataattccatcacattctatttcacaaaaattttaatatttaaactaagtttcactattcaaaattgtaaatttactttaatattaagacaaag |
310 |
Q |
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| T |
43749638 |
ggatatataattccatcacattctatttcacaaaaaatttaatatttaaactaagtttcactattcaaaattgtaaatttactttaatattaagacaaag |
43749737 |
T |
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| Q |
311 |
aaactatataatc |
323 |
Q |
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||||||||||||| |
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| T |
43749738 |
aaactatataatc |
43749750 |
T |
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