View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_17 (Length: 324)
Name: NF8748_low_17
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_17 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 30409476 - 30409164
Alignment:
| Q |
12 |
agagacagccaaatgcttgctcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctagaaatagtggagtccatt |
111 |
Q |
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| T |
30409476 |
agagacggccaaatgcttgttcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctagaaatagtggagtccatt |
30409377 |
T |
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| Q |
112 |
tctacaatgatgtgaaaatggtagatgacgtgattgtcaataccaataatgttgacatacccatatctcgttccgaagaagctagcgatgaaagcactct |
211 |
Q |
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| T |
30409376 |
tctacaatgatgtgaaaatggtagatgacgtgattgtcaataccaataatgttgacatacccatatctcgttccgaagaagctagcgatgaaagcactct |
30409277 |
T |
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| Q |
212 |
gcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409276 |
gcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgcagcaggagcaaagacctcagag |
30409177 |
T |
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| Q |
312 |
gatggttataatt |
324 |
Q |
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| T |
30409176 |
gatggttataatt |
30409164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 191 - 324
Target Start/End: Complemental strand, 30395636 - 30395503
Alignment:
| Q |
191 |
agctagcgatgaaagcactctgcctgaaaattctatccacagcgaggatatcggacaacatcatgtcttagaagcagaacagaaagagatgtctcatgca |
290 |
Q |
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| T |
30395636 |
agctagcgatgaaagcattctgcttgaaaattcaatccacagcaaggatatcggacaacatcatgtcctagaagcagaacagaaagagatatctcatgca |
30395537 |
T |
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| Q |
291 |
gcaggagcaaagacctcagaggatggttataatt |
324 |
Q |
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| T |
30395536 |
gcaggagcaaagaccttacaggatggttataatt |
30395503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 30395713 - 30395631
Alignment:
| Q |
12 |
agagacagccaaatgcttgctcaaggtcaacaactgttagatttttcattcccacaaggtttttcaagtgaatatttagctag |
94 |
Q |
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||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||| |||| ||| ||| ||||||||||| |
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| T |
30395713 |
agagacagccaaatgcttgttcaagatcagcaactgttagatttttcattcccagaagattttccaaatgactatttagctag |
30395631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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